BAC Information

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BAC

Clone NameMSMg01-096B07
Chromosome1 (Build37)
Map Location 129,050,615 - 129,050,999
singlet/doubletsinglet
Overlap genenone
Upstream geneE030049G20Rik, LOC383559
Downstream geneMgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096B07.T7 (MSMg01no096_b07.b1)MSMg01-096B07.TJ (MSMg01no096_b07.g1)
ACCAG312842AG312843
length741768
length of high quality
(start - end)
421 (111 - 531)474 (133 - 606)
definitionCHROMAT_FILE: MSMg01no096_b07.b1 PHD_FILE: MSMg01no096_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:18 2005CHROMAT_FILE: MSMg01no096_b07.g1 PHD_FILE: MSMg01no096_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTTTTTTTTTTTNNTTTTTTTTTTTCGCTCTCTCCCTCCTCCTCC
TCCATATTCTCCCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTT
CCAGAGGATCCGCGGAATTCTCTCTAGACTCTCTAATAGCCATTCCTTGC
CCACTTCTGGGTCTGACCTAACATCTTTATAACTATTAGGTAAGTTCTTT
GGAATATGCAAACAGAAGCCTAGCATCTACCAACCCAAAATATCACCAGG
TAGTGTCTGAGACCTATAGCAGAGATTTCTATGGCTTAGTGTAACTTGCC
CACCTGCTGTTTCCACCAATGTATTTGAGAAGTGTCTTAACTTATGACTC
TCGCTGCTCTGTTACAATAAAAATTTCATGATACTGGTACCATGTTGGAG
TCTGGTAATTGAGGGTGAACTCAATCTATGCTCCCAAGCCATGGTCACTC
ATATTTAACACCAGAATAAATTATCATTTATTCCCTCTTAAAGAGAAAGT
TGTGTATTGGTGTTGACAATAGCTTGTGGATCAGAATCATAGATCACAAT
GTGCAACCCATGATTGATATGTGGGTGTAAGGCAGCCTAATGGCCCCTTT
TGTCCCCCCTTCATATCTTACCTTACATAACCCCTGTCCTCAATCATATT
GCCACTGTTGCACTTTCATTTCTGTTGCCCGTGATTAAATGCCACAACAC
ATGGTTTCTTCTGGGTGCCACCTTTTATTTGTCTTACAATC
NTTTTTTTTTTTTTNTNNNNNNNNNCNCCCCCCCCCCCCTTNCTCCTCCC
CACCACANNCCCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCAATTCCTTGGACAGTACTT
AAAGGCAATCCACAGCCCTTGAACATTAAGCATCACAAAGATATAAAATT
GCTATTGCTCCAAAATGCACCCTGCATCCAACACTCCTGTGTTGGCTGGA
TATTTTAGTTGTAGGAGGCTTGCTATATGTGGGTGTCTGATTAGAGATTA
AATTTTTTTGGTTTTGGTTTTGGTTTTTCAAGACAGGGTTTCTCTGTGTA
GCCCTGGCTGTCCTGGAACTCACTTTGTAACCAGGCTGGCCTTAAACTCA
GAAATTCTGCCTGCCTCTGCCTCTGTCTCCCAAGTGCTGGGATTAAAGGC
GTATGCCACCATGCCCGGCGAGATTAAATTTTTTAAATTAATTTATTTTC
TCATATATTGTATCCTGACCACAGTTTCTCCTCCCTCCTCTCTTCTTAGT
CCCTCCCCTTCTCCATCCATGCCTAGAGGTTTTTTGTTTTGCTTTGTTTT
GCCTTGTTTTAAGATTTTCCTTTGCTTTGTATGTACTTTTATGCATCAGT
GCCTGAGTTTATGCAGATGAGTGCCCATACCTGCTGAGGTCAAAGGCCTG
TTGGAGCCCCTCCCAGATCTAGAGCTATCGTGGTCTGTGAGCCGCCTTGC
CATATGCTTTCAGACATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_b07.g1 MSMg01no096_b07.g1 CHROMAT_FILE:
MSMg01no096_b07.g1 PHD_FILE: MSMg01no096_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:18 2005
         (474 letters)



>mm_chr1_129050615_129051488
          Length = 874

 Score =  737 bits (381), Expect = 0.0
 Identities = 384/385 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccttggacagtacttaaaggcaatccacagcccttgaacattaagcatcacaaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attccttggacagtacttaaaggcaatccacagcccttgaacattaagcatcacaaagat 326

                                                                       
Query: 61  ataaaattgctattgctccaaaatgcaccctgcatccaacactcctgtgttggctggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataaaattgctattgctccaaaatgcaccctgcatccaacactcctgtgttggctggata 266

                                                                       
Query: 121 ttttagttgtaggaggcttgctatatgtgggtgtctgattagagattaaatttttttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttttagttgtaggaggcttgctatatgtgggtgtctgattagagattaaatttttttggt 206

                                                                       
Query: 181 tttggttttggtttttcaagacagggtttctctgtgtagccctggctgtcctggaactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tttggttttggtttttcaagacagggtttctctgtgtagccctggctgtcctggaactca 146

                                                                       
Query: 241 ctttgtaaccaggctggccttaaactcagaaattctgcctgcctctgcctctgtctccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ctttgtaaccaggctggccttaaactcagaaattctgcctgcctctgcctctgtctccca 86

                                                                       
Query: 301 agtgctgggattaaaggcgtatgccaccatgcccggcgagattaaattttttaaattaat 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 85  agtgctgggattaaaggcgtatgccaccatgctcggcgagattaaattttttaaattaat 26

                                    
Query: 361 ttattttctcatatattgtatcctg 385
           |||||||||||||||||||||||||
Sbjct: 25  ttattttctcatatattgtatcctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)