BAC Information

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BAC

Clone NameMSMg01-096B13
Chromosome1 (Build37)
Map Location 13,216,283 - 13,216,435
singlet/doubletsinglet
Overlap geneNcoa2
Upstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14
Downstream geneLOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096B13.T7 (MSMg01no096_b13.b1)MSMg01-096B13.TJ (MSMg01no096_b13.g1)
ACCAG312854AG312855
length742734
length of high quality
(start - end)
35 (141 - 175)153 (81 - 233)
definitionCHROMAT_FILE: MSMg01no096_b13.b1 PHD_FILE: MSMg01no096_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:20 2005CHROMAT_FILE: MSMg01no096_b13.g1 PHD_FILE: MSMg01no096_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACTTTCCTCATATTTGCGGCGTCTAATACGACTATTATATCTAGAGGAT
CCGCGGAATTCTTCTGTCTGCTCAATTGCTTGCAGGCCACCAGGCGCGCT
TTCAGGAAACTCGCTCCTGTGCTCTGCCAGGATCTGCACGCATTGCTTGT
AATGTTCCAGCTGCCAGGACCCAGGGCCTGTTGTCAGATATGACAATGAT
GCATGCGATTTTTTGTTGCCCACTTATGCCCCCCAAGGTTTCACTTGCAG
AGTGAGTGAGTTCCGGAACTTGCCTGCTCGCTGCCCTCTGCCTATTAGAG
GCCACAACTGAACGAGGCCAGGCCCTTCCAGCAGCTCCATCTTGCTCATA
GGATCTGCTCGTGAACAAACTTTCTCTGTTCCCAATGCCACCCCTGCTTT
CTTAACAACATTTACTCATTATCTTACCATCTCTAACTACATTGTCAATC
CGCTCACCACCACTAACTTTCATTCGCTTTGAACATCGTCACCTATACTT
ATTGAATCTTGCCACGTCTGCTGTCCTACCTCTTCCCTCAAATCTTTCTT
CAGCTCACCACTCCCCTTTTCCCCGCCCCCCCACCCCTATTCCTCCGCTC
CTTATACCTCCTACCCCTCTACATACGCCCCCCCCCTTCTCTCCCCCCTT
CCTCCCCCCTTCCACCCCACTGTTCCCTATCTCCCTCTCCCCGTATTCCA
GCCCCCTCCTCTGATTCCTATCCTACCCCCTCCCTCTCCCCC
CTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTAGTTTATGCTATGTAC
TAAAGCCAATTTACAGATTCACACCTCACATTGAAATCTGCATTGCTAAG
TAGCCAAGGGCTAACGTTCAGGCCCAAGCTTCACTGCGTGGTTAGTCATG
TGACCTTAAAACTTGCTACTGCACACCACTGATCTTCTGTAAGCTGGAGT
CACACCTCTGGCATCCGTAGCACACGCTGCCTAGAGGAGGTGGAAGGGCA
AGGTCTGGGATCTCGATGGAGAGAACTCTTGCTCTTCACTAGCAAGTCAC
TGTTGAGGTAGTCATCTATATACGTCTTCCTGCCTTGCCTGTCCTGCGCG
ACCTGTTTTTCATTCTCTACAGGCACAGCGCCATGGAAAAAGTCACAAGA
TCTAACCAACAAGGGCTTCTGTGCACAAAATGACTGCCACTCTCTCATAT
AACGCCTGCCTTCCTGTCCGCGTATATGGACATGCCCACGTCGCCCGACA
CAACAGATAAACAAGCCCAACGCCGATGAATCCCGGCACCGTGCTGTCAT
CCATTTCCACACCGACATCCCCGAGGGCCATGCACCCCGCCATCTATTGC
CCGACTTACCCGATGCCGCCAGCCCCCCAATTAACACGCCCACATACACC
CATACTCCCTACTTTTCCTTGAGGCCTATTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_b13.g1 MSMg01no096_b13.g1 CHROMAT_FILE:
MSMg01no096_b13.g1 PHD_FILE: MSMg01no096_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:20 2005
         (153 letters)



>mm_chr1_13216083_13216635
          Length = 553

 Score =  265 bits (137), Expect = 9e-76
 Identities = 149/153 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttagtttatgctatgtactaaagccaatttacagattcacacctcacattgaaatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttagtttatgctatgtactaaagccaatttacagattcacacctcacattgaaatctg 260

                                                                       
Query: 61  cattgctaagtagccaagggctaacgttcaggcccaagcttcactgcgtggttagtcatg 120
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 261 tattgctaagtagccaagggctaacgttgaggcccaagcttcactgcgtggttagccatg 320

                                            
Query: 121 tgaccttaaaacttgctactgcacaccactgat 153
           |||||||||||||||||||||||||| ||||||
Sbjct: 321 tgaccttaaaacttgctactgcacactactgat 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 153
Length of database: 553
Length adjustment: 8
Effective length of query: 145
Effective length of database: 545
Effective search space:    79025
Effective search space used:    79025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)