BAC Information

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BAC

Clone NameMSMg01-096B23
Chromosome1 (Build37)
Map Location 180,855,206 - 180,855,442
singlet/doubletsinglet
Overlap geneKif26b
Upstream geneEG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik
Downstream geneSmyd3, LOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096B23.T7 (MSMg01no096_b23.b1)MSMg01-096B23.TJ (MSMg01no096_b23.g1)
ACCAG312874AG312875
length736773
length of high quality
(start - end)
365 (49 - 413)239 (72 - 310)
definitionCHROMAT_FILE: MSMg01no096_b23.b1 PHD_FILE: MSMg01no096_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:22 2005CHROMAT_FILE: MSMg01no096_b23.g1 PHD_FILE: MSMg01no096_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTTGCCCTGAACCCCATTTTTAATGGGGTTATTTGAATTTC
TGGTGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATCAGTCCCCTA
TCAGATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCTTTT
TGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGA
GGTCCCATTTGTCAATTCTTGATCTTACAGTGCAAGCCATTGCTGTTCTG
TTTAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCCACTTT
CTCCTCTATTAATTTCAGTGTCTCTGGTCTTATGTGGAGGTCTTTGATCC
ACTTATACTTGAGCTTTGTACAAGGAGATAATAATGGATCAATTCGAATT
CTTCTACATGATAACCGCAGTTGTGCCAGCACCATTTGTTGAAAATGGCG
TCTTTTTTCCAGCGAAAATCCTTACCTTTAATTAGAGTGTCACCAATAGG
AAGGTTATTTTTCTGTCACATGCATGAAGTACCTAAAGCCCTCTAATAAA
CGGAAGCATTGGTGAAACTGACAGTTACCGTGAGTGCTCCTGGACAGTTG
GTTGCTCCCCGCGCAGAGCTCTACTTACTACCTACCTTCCCTTATTTGGG
ACTAACAACCCATTATTGCCACCCTACTTGCATGAA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCCTTCTTAAGTTACTTCCATCAAGGAA
AAAATAATGAATGCAACAATTTTATCACAACCTGGATCAAATGGAGAGGG
ATGACTTAGGGGTACCTACCACCTGCAAGAAGCGCTGACTTAGGTCCTCT
TGGACACTCTGCTTCACTCCACCCTGGATTAGTCAGAGTTGTGCCTCCTG
CCTTTCTGGTGTTGTTTCAGGGCTCCCAGTTCACAGAAGCTGGAGCTGAG
ACACAGAGCACTAGAACAGCTTGTCGGGAGTCAGCTGGCTTGGGCAGGCT
TTAAAAAACAACAGTTCATTATCTGATTTGTTCCCATATAAAGGTGTTAG
ATAGACCCTAAGAGACAGCATTTGCTTTGCCCTTGTGGCTGATGTTCCCT
GGTCTCATAGATCACTGCCTGCACTTTATTGAAGGGCGTGCGCGCCTCCC
TGTTCGTGCGCGCGCCTGTCCGTTCCTTCCCTCCCTCCTTTCCCCCCCCC
CTTTTTTTTCCCCTACCCTCTCTCCTTTTCTCTTCCTCTCCCCTTCCCCT
TTCCTTCCTCCTCCCCCTTCTCTATTATCCCTCCTCCCCCCCTTTTCTCC
GTTTCTCCTCCTTCCTCCTTCCCCTCTTCCCCCTTTCTCCTCTCCCTTTT
TCTCTCCGCGCCCCTTCTTTTCCCTCCTCTACCCTCCCCCCCCCTTTTCG
CCCCCCCCTTCTTTCCCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_b23.g1 MSMg01no096_b23.g1 CHROMAT_FILE:
MSMg01no096_b23.g1 PHD_FILE: MSMg01no096_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:22 2005
         (239 letters)



>mm_chr1_180855006_180855644
          Length = 639

 Score =  420 bits (217), Expect = e-122
 Identities = 232/237 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccttcttaagttacttccatcaaggaaaaaataatgaatgcaacaattttatcacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 201 ctccttcttaagttacttccatcaaggaaaaaataatgaatgcaacagttttatcaaaac 260

                                                                       
Query: 61  ctggatcaaatggagagggatgacttaggggtacctaccacctgcaagaagcgctgactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggatcaaatggagagggatgacttaggggtacctaccacctgcaagaagcgctgactt 320

                                                                       
Query: 121 aggtcctcttggacactctgcttcactccaccctggattagtcagagttgtgcctcctgc 180
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 321 aggtcctcttggacactctgcttcactccaccctggaccagtcagagttgtgcctcctgc 380

                                                                    
Query: 181 ctttctggtgttgtttcagggctcccagttcacagaagctggagctgagacacagag 237
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 ctttctggtgttgtttcagggctcccagttcacagaggctggagctgagacacagag 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)