BAC Information

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BAC

Clone NameMSMg01-096D22
Chromosome1 (Build37)
Map Location 51,216,399 - 51,216,827
singlet/doubletsinglet
Overlap geneTmeff2
Upstream geneEG666970, LOC100041993
Downstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096D22.T7 (MSMg01no096_d22.b1)MSMg01-096D22.TJ (MSMg01no096_d22.g1)
ACCAG312967AG312968
length722725
length of high quality
(start - end)
168 (117 - 284)429 (79 - 507)
definitionCHROMAT_FILE: MSMg01no096_d22.b1 PHD_FILE: MSMg01no096_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:32 2005CHROMAT_FILE: MSMg01no096_d22.g1 PHD_FILE: MSMg01no096_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGG
ATCCGCGGAATTCAAAGCTTTCCTGGACTACAGAGCCAGTTCCAGGACAG
CCAGGGCTACACAGTCAAATCCTATATTGTTCCTTATAAATTTCTCTACT
GGGGGAAACAGTCACATTTTTGTTCTCATTTTTAAACACTCCAAACTATT
ACAATCCTGTCTAAGATTATAAACACTTACACACACACACACACACACAC
ACACACACACACACATATTTTCCCCATTTCTAAGACATGCCATTTGAAAT
TCCCACCGTTCACAACCGTTTGATGTGACTTATCTCCTGTCACAGAGTTG
TACATGTTCTCTTGATTTATGTTTTACGACCGCCTTGGTCAATTAAATGG
GCTTTCCATTTTCTCCATGCCCTTTTTGACAATTTCCCCTTTATTGTATG
ACATAAGAGGGTCCTCTGTAACTCCCGTTCTCTTGGACCTGTTTATGTCC
CCAAGGAACCCTTTCGACCTTCCGCCCTATTTCTTTATCCTTCCACACGT
TGACATCACCGGTCATATTGCCCCCCTGCCAGCTTTACTTGGCCGGACCC
TGTACACGCCACATTGTTTAGCATTCCTCGAATTAACGCCCATTCTCCCT
CATAACTTTCCTGTTCCTTGCCCACTTCACACCACCCCTCACCTCCCCGT
TTACGCCTTCTTTTTTCTGCTG
CCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAGATTTAGTCTCTTTAAAG
AATCTCGTTTTCTTGTGTTAAGATTTACAAAAACACAGAGAAGTGCTTTG
CTTAAAATCATTCTTCAATGATATTTCTTCATAGTCTCAATTCTCATCAT
TTCATGTTTCTAACTGTGCCTTTTAAACTTGCTTCTCCAAATGTCCTATA
GATAATTACCAATGCCCTTTGTCCCATTTCATATATCATATATCTCTAGG
CAATTTCTTTAATATTAATTAGTATTAGATATTTCATCCCCTAATATTTT
TCGACAAAAAAATAAATTATTTCCAGTTTATGCAATTCTATTGCATACAT
ACTGAACCATAACCATAAAATTTTTAGTGTTTTCTCAAAAATCACAAGAC
ATTTTGAGATATTTGTATTGAAGCTAAAATATTTCTCCTCAAAGTTTACA
TGATACCAAATGGAATTAGTTAGCTATTTAAGGCAAATTTTCATCTTCAT
TTGTTTCTCTATTTTTTTTTTATTTTGAGATAGGGCCTCTATGGCGTTTT
GAATGAAAAAATAAAATAAAAGCCCTCTTAGGCTCATATATTTGAATGCT
TGACCCCTATTTGGTAAAACTGTTTGCCAAGGTGTATGGCTTTGTTGGAC
CACGTATGCCCCTGATTTCCATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_d22.g1 MSMg01no096_d22.g1 CHROMAT_FILE:
MSMg01no096_d22.g1 PHD_FILE: MSMg01no096_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:32 2005
         (429 letters)



>mm_chr1_51216199_51217028
          Length = 830

 Score =  743 bits (384), Expect = 0.0
 Identities = 418/430 (97%), Gaps = 3/430 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagatttagtctctttaaagaatctcgttttcttgtgttaagatttacaaaaacacag 60
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagatttagtttccttaaagaatctcgttttcttgtgttaagatttacaaaaacacag 260

                                                                       
Query: 61  agaagtgctttgcttaaaatcattcttcaatgatatttcttcatagtctcaattctcatc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 agaagtgctttgcttaaaatcattcttcagtgatatttcttcatagtctcaattctcatc 320

                                                                       
Query: 121 atttcatgtttctaactgtgccttttaaacttgcttctccaaatgtcctatagataatta 180
           ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcatgtttctgactgtgacttttaaacttgcttctccaaatgtcctatagataatta 380

                                                                       
Query: 181 ccaatgccctttgtcccatttcatatatcatatatctctaggcaatttctttaatattaa 240
           |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ccaatgccctttgtcc-atttcatatatcatatatctctagacaatttctttaatattaa 439

                                                                       
Query: 241 ttagtattagatatttcatcccctaatatttttcgac--aaaaaaataaattatttccag 298
           ||||||||||||||| |||||||||||||||||||||  ||||||||||||| |||||||
Sbjct: 440 ttagtattagatattccatcccctaatatttttcgactaaaaaaaataaattctttccag 499

                                                                       
Query: 299 tttatgcaattctattgcatacatactgaaccataaccataaaatttttagtgttttctc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttatgcaattctattgcatacatactgaaccataaccataaaatttttagtgttttctc 559

                                                                       
Query: 359 aaaaatcacaagacattttgagatatttgtattgaagctaaaatatttctcctcaaagtt 418
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaaaatcacaaggcattttgagatatttgtattgaagctaaaatatttctcctcaaagtt 619

                     
Query: 419 tacatgatac 428
           ||||||||||
Sbjct: 620 tacatgatac 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 830
Length adjustment: 9
Effective length of query: 420
Effective length of database: 821
Effective search space:   344820
Effective search space used:   344820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)