Query= MSMg01no096_e04.b1 MSMg01no096_e04.b1 CHROMAT_FILE:
MSMg01no096_e04.b1 PHD_FILE: MSMg01no096_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:33 2005
(355 letters)
>mm_chr1_110549694_110550448
Length = 755
Score = 661 bits (342), Expect = 0.0
Identities = 351/354 (99%)
Strand = Plus / Minus
Query: 2 attatattttttcatatcacccaatggtactattttctgaatatgccaaaaggacttcac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 attatattttttcatatcacccaatggtactattttctgaatatgccaaaaggacttcac 314
Query: 62 attctgcttcacaaatatttcctcagcctgtttattgtcactgtattcacaattacactg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 attctgcttcacaaatatttcctcagcctgtttattgtcactgtattcacaattacactg 254
Query: 122 tccagtgtaaaataaataataaaatcagagtaaagacagttgtacagctctgtgtaaaaa 181
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tccagtgtaatataaataataaaatcagagtaaagacagttgtacagctctgtgtaaaaa 194
Query: 182 aataaataaataaaatcatgagagaagtatgtaaatgaacagaactagaaattgaataag 241
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 actaaataaataaaatcatgagagaagtatgtaaatgaacagaactagaaattgaataag 134
Query: 242 gtaaccagacctagaaagatgaatgttgcagtctctttcttaccaaggttctgaactcca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 133 gtaaccagacctagaaagatgaatgttgcagtctctttcttaccaaggttctgaactgca 74
Query: 302 agtcttgagttttgagtgtctaatttggaatagctattgaaaccagaaatacaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 agtcttgagttttgagtgtctaatttggaatagctattgaaaccagaaatacaa 20
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space: 258116
Effective search space used: 258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no096_e04.g1 MSMg01no096_e04.g1 CHROMAT_FILE:
MSMg01no096_e04.g1 PHD_FILE: MSMg01no096_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:33 2005
(409 letters)
>mm_chr1_110447276_110448084
Length = 809
Score = 702 bits (363), Expect = 0.0
Identities = 397/413 (96%), Gaps = 11/413 (2%)
Strand = Plus / Plus
Query: 1 attaccttgatacagaatcattgtgctgaaatctctgaattctagagaacagaatgaacc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 attaccttgatacagaatcattgtgctgaaatctctgaattatagagaacagaatgaacc 260
Query: 61 atgcttgtatatgcaatttttttagcccatatgaaattataaataatatccactagttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcttgtatatgcaatttttttagcccatatgaaattataaataatatccactagttca 320
Query: 121 gtacaaactcatttgtttttttaattaatctgacctgttttcataaaattttggtttttt 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gtacaaactcatgtgtttttttaattaatctgacctgttttcataaaattttgttttttt 380
Query: 181 ctcttttttttt---ctatttaccactttatttttttattacatattttcctcaattaca 237
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 -tcttttttttttttctatttaccactttatttttttattacagattttcctcaattaca 439
Query: 238 ttttcaatgctatcccaaaagaccccacaccccccccccactctcctacccacccattcc 297
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 ttttcaatgctatcccaaaagacccc------cccccccactctcctacccacccattcc 493
Query: 298 cattttttggccctg-cgttcccctgtactggggcatataaagtttgcctgtccaatggg 356
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 catattttggccctggcgttcccctgtactggggcatataaagtttgcctgtccaatggg 553
Query: 357 cctctctttccagtgatggctgactaggccatcttttgatacatatgcagcta 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cctctctttccagtgatggctgactaggccatcttttgatacatatgcagcta 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
