BAC Information

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BAC

Clone NameMSMg01-096E11
Chromosome1 (Build37)
Map Location 155,276,153 - 155,422,478
singlet/doubletdoublet
Overlap gene1700012A16Rik, Dhx9, Npl
Upstream geneGlt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058
Downstream geneLOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096E11.T7 (MSMg01no096_e11.b1)MSMg01-096E11.TJ (MSMg01no096_e11.g1)
ACCAG312993AG312994
length717738
length of high quality
(start - end)
186 (77 - 262)246 (70 - 315)
definitionCHROMAT_FILE: MSMg01no096_e11.b1 PHD_FILE: MSMg01no096_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:34 2005CHROMAT_FILE: MSMg01no096_e11.g1 PHD_FILE: MSMg01no096_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,422,297 - 155,422,478)(155,276,153 - 155,276,398)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAACTCGGGCGGAATCTC
TTTCCATTGCAAACAATCTCAGAGAACTTGAATCTTAAAAATCCATGGAC
CTTGAAAAAATTTAATTTCTGCTTAACTCTGGGAACGTGAAAGTTGTTGC
AAATGCAAGCAAATTGTGAGCCAAGCAAATGTTCCATCTTGCTTCACTGC
ATTTGTGTTTTCTGATAATATTCACCAGCAATTTCTAAGATGCCTCTTAT
CTTACCAGCAAGGCTAGCTGTCTTGTTTGCTTGTTTTTTTCATAATTAAT
GGTGATATAAATTTATTTGTCTTCTATTATTTTTTTTTTTACTATTTTCA
TTTCTGTAATACCACCCACCACCGCCAGCTTTAAAAGCATCCCACGTTGA
TTTCAGTTTGTAACCCCATGATTTAATTGCTTATTACTGTTGAGCCCTTT
GTCCCTCGTTCTGATAAACTGAAACCATTTTGGCTACTTCATTCCCATTC
AATCAGTGCTTATACAGTGGCCTCCATATAGCTACACCTACTCTCAGCCA
ACAGTAAAATGTCTAATCATGCCTTCTGTACATTACACTTCGTAAATATC
GCATCCCATCTGCATATTACAGCTGAGATACACAACCTTATTCCCCATCC
AATCCTGTATGTCTCTTGTCCCACGATCTATCTGCTCTTACCCTCCACCC
CATTCCTGGTGTTCAAG
GTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAGGGTGACCAGATGACACAGAGAAAACATGCC
CCAAACAAACAAACAAACAAACAAACCCCACAAAAATGTATTTCTTGGAA
AACTAGTAAGTTGGGCTTTTACAAATGGTCTACTAGGTCGTCATATTTAT
CTGGATTTTATATATAATCATTGAGATGAGGGAATAAAACCTGATGTGGA
AACTGCTGTCAAATGTGACCTTTTCGGTGTGACTGTCCTACAAGCCATTA
CCTAAGTGTCAGGTGCACTAGTTCTCTGGTTGTAGAGCGTGGCACACTGG
TGCCATATGTTTGAGTCCCTTACAGATAATTATCCTTGTATAGAAATTAA
TTGCCATTATTACATTCGCTACAATCTCTTCCAGGAGATTGTTTTCTAAT
CTTTTTCTTTTACATTTTAAGAGAACCTTTGCATGTGAGTGCCTAGTCCC
GTGTTCATATACCACAGTACATATGTGAGGTTCATGAGACAACTTTCCGG
AGCTGCCTCTCGCTTCTCTCCTTCCATTGTGTGCGTTCCGCGGTTCAAAG
TCCGTATAGTTAAGCTCAGTGCGAATGCCCTTAGTCACTGAGTCGTCGTC
TTGTCCCTAGAGATGTTTCAAGTGTTGTTGCTTTGGTCCCAATTAAAAAT
CTTGATGTCTTGGATCCGTTCCCAGTCGGCCTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_e11.b1 MSMg01no096_e11.b1 CHROMAT_FILE:
MSMg01no096_e11.b1 PHD_FILE: MSMg01no096_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:34 2005
         (186 letters)



>mm_chr1_155422097_155422682
          Length = 586

 Score =  344 bits (178), Expect = 2e-99
 Identities = 181/182 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgaatcttaaaaatccatggaccttgaaaaaatttaatttctgcttaactctgggaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cttgaatcttaaaaatccatggaccttgaaaaaatttaatttctgcttaactctgggaac 323

                                                                       
Query: 61  gtgaaagttgttgcaaatgcaagcaaattgtgagccaagcaaatgttccatcttgcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtgaaagttgttgcaaatgcaagcaaattgtgagccaagcaaatgttccatcttgcttca 263

                                                                       
Query: 121 ctgcatttgtgttttctgataatattcaccagcaatttctaagatgcctcttatcttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 262 ctgcatttgtgttttctgataatattcaccagcaatttctaagatgcctcttagcttacc 203

             
Query: 181 ag 182
           ||
Sbjct: 202 ag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no096_e11.g1 MSMg01no096_e11.g1 CHROMAT_FILE:
MSMg01no096_e11.g1 PHD_FILE: MSMg01no096_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:34 2005
         (246 letters)



>mm_chr1_155275953_155276598
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtgaccagatgacacagagaaaacatgccccaaacaaacaaacaaacaaacaaacccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggtgaccagatgacacagagaaaacatgccccaaacaaacaaacaaacaaacaaacccc 260

                                                                       
Query: 61  acaaaaatgtatttcttggaaaactagtaagttgggcttttacaaatggtctactaggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaaatgtatttcttggaaaactagtaagttgggcttttacaaatggtctactaggtc 320

                                                                       
Query: 121 gtcatatttatctggattttatatataatcattgagatgagggaataaaacctgatgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcatatttatctggattttatatataatcattgagatgagggaataaaacctgatgtgg 380

                                                                       
Query: 181 aaactgctgtcaaatgtgaccttttcggtgtgactgtcctacaagccattacctaagtgt 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactgttgtcaaatgtgaccttttcggtgtgactgtcctacaagccattacctaagtgt 440

                 
Query: 241 caggtg 246
           ||||||
Sbjct: 441 caggtg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)