BAC Information

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BAC

Clone NameMSMg01-096E19
Chromosome1 (Build37)
Map Location 84,139,470 - 84,139,585
singlet/doubletsinglet
Overlap gene5033414K04Rik
Upstream geneLOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096E19.T7 (MSMg01no096_e19.b1)MSMg01-096E19.TJ (MSMg01no096_e19.g1)
ACCAG313009AG313010
length739770
length of high quality
(start - end)
116 (263 - 378)72 (217 - 288)
definitionCHROMAT_FILE: MSMg01no096_e19.b1 PHD_FILE: MSMg01no096_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:36 2005CHROMAT_FILE: MSMg01no096_e19.g1 PHD_FILE: MSMg01no096_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTTTTNTTTTTTTTTTTCTTTTCTTCTTCCTTCTCTCC
CAAACAAAACACTTCTAAATTTGGGCGCTAATAGATNACTATTTTCTGAG
CGGGGCGGAATTCATACTTGTTCCATGAACAAGTGAATGTTAGATTGCTA
GTTGCAGACTGCTGAAGTAACCACCTGAACAGTCGGAATTGTGTTTCCAA
TTGTTTTTATTCCTTCAGTTGTAATGGTATCCAAGTTATAGTCACAGAGA
AAAATATCCAGTGATGTGAAGTACTAGTCATAAAATATTTTTTATTTGCC
CCCCATAAACATATTTATTTTGGGTGTTTCTCCTTGTATTTATTTTCATA
TTTCCAAATGGCTTCTCCATCACTCATGTTTTTTATTACCTCCTGGCTCT
CTATTTTGTCAGGTAGAGATTTGAGCCTGCCCCAACCTTACTCATTGTCT
TTCTGCTGGCTTTCTCATGTAATTATTTCTGCAAGTTTAACTAACCCATC
TATCTGTGAGGTAACTTCAGTGTCCTTCAGCGCACCACGATTCTATTCCT
TAGACTGCCAGTTCATTGACTCTCCTGTTTTGCTCCTGGTACTTTGAAGT
ATCATGGTGACTTGCTATAGCATAATGACTTTTCCTTCCGTTTATCCCTC
TGATCGTTGCCCCCAACTTTGGAATCTCCTGCCTCCCTTGCTACTATATT
ATACCTGATGTTCCCCCCCGACCTCTCTTCCTTAACTCC
TCCTCCTTTACTCTCTTTCTTTCTCTTTTTATTCTTCCTCCCTACCCACA
ATCCCTCCCTTTCGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCGAAATCCTGATCTTTCCACACTT
TTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTCTCCGCATCAAAG
GAGATGATCATGTGTTTTTTGTCTTTGAGGTTGCTTATATAATGGATTGC
GCTGATGGATTTCCCTATATTAAACCATCCCTCCATCCCTGGAATAAAAC
CTACTTGCTCAGGATGGATGATTGCTTTAATGTGATCTTGGATTCAGCTA
GAGAGAATTTTATTGAGGATTTTTGCATCAATATTCATTAGGAAAATTGA
ACATGAACCTCGCTATCTCTGTTGTATCCTTCGTGTAGGTCTAGGTATCA
GAGTAACTGCCTGCTTCATAGAATGTGTTGGGATAGAGTACCTGCGACTT
CTATTTTGTGGACATATTTGTGTCTAATTGGAATTATACCTTCTTTGAGG
GTCTGATACATCTCTGCACTACATCCAATTGGTCCTGGCCTTTTTTCGGT
TGGCACACTATTAATGACTGCTTCTATTTCTTTACGGGATATGCTACTGT
TCTAATAGTTCACTCGATCCTGATCTATTTCTTTTACCCTGTTATCTGGT
CTGCAATTTTGTCCTTTCTACCCATTTATTTCTCTTTTTTGTCGCCCCTA
CCTTTTCCCCATTCCCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_e19.b1 MSMg01no096_e19.b1 CHROMAT_FILE:
MSMg01no096_e19.b1 PHD_FILE: MSMg01no096_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:36 2005
         (116 letters)



>mm_chr1_84139270_84139785
          Length = 516

 Score =  201 bits (104), Expect = 1e-56
 Identities = 113/116 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgtgaagtactagtcataaaatattttttatttgccccccataaacatatttattttg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 316 gatgtgaagtactaatcataaaatattttttatttgccccccataaacatagttattttg 257

                                                                   
Query: 61  ggtgtttctccttgtatttattttcatatttccaaatggcttctccatcactcatg 116
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 256 ggtgtttctccttgtatttattttcatatttccaaatggtttctccatcactcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)