BAC Information

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BAC

Clone NameMSMg01-096H01
Chromosome1 (Build37)
Map Location 171,570,825 - 171,571,135
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383613, Nuf2
Downstream geneRgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096H01.T7 (MSMg01no096_h01.b1)MSMg01-096H01.TJ (MSMg01no096_h01.g1)
ACCAG313116AG313117
length772804
length of high quality
(start - end)
314 (103 - 416)237 (140 - 376)
definitionCHROMAT_FILE: MSMg01no096_h01.b1 PHD_FILE: MSMg01no096_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:47 2005CHROMAT_FILE: MSMg01no096_h01.g1 PHD_FILE: MSMg01no096_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTNTTTTNNNTCTCTTTTCCTTCCTTCTCCCCTTCCTCT
ACCANTCCTATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGAACAGTTCTCCTCACCTACCAAACCCAAGATGATT
TTAGGCTTTTAGCTGCCAGAGCTGTATGAAATTATTTTTTTACTGCTGTT
CCTAAGCCCTCTTCGAGTCAGATGATTTGTCAGAGCAGCATAAACAGACA
AAGTCAACATGAAATCATAAAAAGCATGTGGCAGTTACCTACATATATCA
TGAGTCCTGTTGATGGTGATGTAACCTGCATCTTACCTTTTGCTCTTAAC
TGTAAACTTTTGGTTTTAGCTTTACATTATAATGGTAGCTCTCAGCATAG
AACATTTTCTGTGTACCAGGAGCTTTACCCCCCTTCCGCTCATTTAAATA
TTTAGTTCCCACAAGCAAATCTATGATAAAAGGTACACTTACTGCTATTT
TTTACAAAGAAGAATGCTTTAGTCTTTTTCAGACAGATTATATTATTATT
GATTATAAAGCATCACCATTAGTACTACATTCTTGATATCGTCCCCCACC
TAAAATTCGCGCTTTTACAGAACAAAGCCTACCCCCCTTAACTCCAATCT
CTTCTCTTTTGGGTAGCATTACTCTCTTGTTCCTACGAACATCTGTTTAC
CTGCCCTCCTTCCCTTTCTTCCTTCTCCCCCACATTTTCCCCCCCCAATT
CCCCTCCCCATCCTATCGCCTC
TTTTTTTTTTTTTTTTTTTTTTNNNNNNNTTNNNCCCNTCTTNNNCNGCG
TGTGCAAAANNAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGATGGATA
TAATCCTCAGTGCCAGCAGGAAACAGGTCATCACCCTTACTTGCATCAGC
AAAGGGGTCGAAAGAGTGGAGGTTCTGGATAGCGGACATATGACACGATT
CCTTTTCCTTGGTGGAAACGGCCTGCTGAAGGCGGCTGTGGGAGAAGGTG
GGCAGGAGGGACTGAGCGACGGTAAGCAAGGGGGCTCGAGGGGGAGGCAG
CTGAGTCCTCAGCAGAGGCTCAGGCAGTGGGGCTGGGATAATCATTTGCA
AGAGGGCATAGCTGAATGCCCTAAGGAGACAATTGCTTAACTCAGAGGAC
TGTCACTCATATTTCCTCCCCGTTCCCTGCGTCTTCGCTGCTTTGTTGTT
GCTGTTGCTTTGTTTTGATCAGTCACTAATTCCGCTGTCCCTTTGCGCAC
GATATGAATCCATCCCCTGGTACCTGTATAATCCTACCCGGGGTTAGTAT
TTTTTTGTAAACAAGATATTTTTTCACCCGGTGCTTTCCTACTCTATTTA
CTGTTCACTTCCCTTGTTTTTCTTACCCAACTTCTCTTGTGCTTCCCTCC
TTTTTGGTTCCACCCCCCGCAGTATCCTCCACCCCTTCCTACTGCCTGGT
TTCCTCGTGCTTTCTTTTTGCCCTATCTTTTTGTCCTTTTTGCCTCTAAT
ACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_h01.b1 MSMg01no096_h01.b1 CHROMAT_FILE:
MSMg01no096_h01.b1 PHD_FILE: MSMg01no096_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:47 2005
         (314 letters)



>mm_chr1_171570622_171571335
          Length = 714

 Score =  565 bits (292), Expect = e-165
 Identities = 307/314 (97%), Gaps = 6/314 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaagaacagttctcc---tcacctaccaaacccaagatgattttaggcttttag 60
           |||||||||||||||  | ||   ||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattcaagaacag--c-ccttgtcacctaccaaacccaagatgattttaggcttttag 458

                                                                       
Query: 61  ctgccagagctgtatgaaattatttttttactgctgttcctaagccctcttcgagtcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctgccagagctgtatgaaattatttttttactgctgttcctaagccctcttcgagtcaga 398

                                                                       
Query: 121 tgatttgtcagagcagcataaacagacaaagtcaacatgaaatcataaaaagcatgtggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgatttgtcagagcagcataaacagacaaagtcaacatgaaatcataaaaagcatgtggc 338

                                                                       
Query: 181 agttacctacatatatcatgagtcctgttgatggtgatgtaacctgcatcttaccttttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agttacctacatatatcatgagtcctgttgatggtgatgtaacctgcatcttaccttttg 278

                                                                       
Query: 241 ctcttaactgtaaacttttggttttagctttacattataatggtagctctcagcatagaa 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 277 ctcttaactgtaaacttttggttttagctttagattataatggtagctctcagcatagaa 218

                         
Query: 301 cattttctgtgtac 314
           ||||||||||||||
Sbjct: 217 cattttctgtgtac 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)