BAC Information

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BAC

Clone NameMSMg01-096K23
Chromosome1 (Build37)
Map Location 113,043,487 - 113,044,041
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096K23.T7 (MSMg01no096_k23.b1)MSMg01-096K23.TJ (MSMg01no096_k23.g1)
ACCAG313304AG313305
length717700
length of high quality
(start - end)
555 (65 - 619)479 (60 - 538)
definitionCHROMAT_FILE: MSMg01no096_k23.b1 PHD_FILE: MSMg01no096_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:07 2005CHROMAT_FILE: MSMg01no096_k23.g1 PHD_FILE: MSMg01no096_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGGCGCTAAACGACTCCTATATTTCAGAACTCGGCGGAATTCTTGTTT
GCTTGCANAAATGCAAAAAACTTGAATAAATCAGTCTTTCTAAGTCCTAT
CATAGATAAGGGACTTAGATATTCAATCCCAGTCACTGTCATGGACAGAA
TGTGAAATCTTAGCTGTTGGAAGAGGAAGAGACAATTTTCTCTACAAATG
TAACCACTGATGGTTTGATGATGTTCCAGTGGAAGAATATTTAAGCATCA
CAAGTTGGTCTTGAAAAGAACTCTGGACACAAATGTAGGGACTGAGAAAT
GGATCTAGGAGGTGTTTGTCATATGAACATGATCAAAAACAGTGGAATAA
CTAAAACAAACATGTTGCATAAAATGTAGAAAGATTTAATACAAACATTG
TTTTAGACTTTAACAAATGAAAAGCACTCAAAATTGCATGTGTCTGTCTC
AAATATAGAAGTAAACCCAACTATAAAACTAGGGTACTGATTCTGAAGTG
TACACTTGGTTTCAAAAACCTAATGATCCTACATAAATTGTCAGAAATGA
TGGATATATCTTCATTGCTAGATGATTTAATTTACTTGAAAATAATAATG
AATCAAATGTCTCCTCACCTGAATTTCAGAATTAGCACTTTGCATATTAT
ATTGCCCTGTCAAGAAAGCTCTAGGTGACAGTTAATCACATAAGTGTCAC
TAAATTACTGTTAAAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGCGAAAAACCACCTGGTCTTGGAATCTTTCTCCATTTACTGGAA
AACTTTTAAAGTCTAATTTTATTACCTTAGTGGTTATAGAAGTGTTTTGA
TTCTACTTGATCTTGATTTAACTTTGGTAAGTGGAATCTGGCAATAAAAT
CATACATTTCTTTTAAAATTCTCCATTTTGTGAAATAGAAGCATTTGAAG
CAAGAACTACAAATTCCTTTGAATTTCCTTAGTTTCTGTTTCTATGTCCT
CCCTTTTAACTCTTATTTTGTTTGTTTGGATACTGTCTCTGCTTTTCACT
TAGTTTGACTAATATATTTTATAACTTGTTGATTTTCTTTAAAAGCCACC
TCTTAGTTTCATTGCCTTCTTGTTTTGTTCTCTTCATTGCTAACTTACTG
ATTTCAGCCCAAGGTACAAGTATTTCCTGCAATCTACTTCTCTTGTGTCT
GTATGCTTCTTTTTCTCCAGAGACTGTCTGTGTGCTTTACAATTGCTAGT
ATGAGATCTCTCTAAATTCTTCATGAAGGCACTTGGCGCTACCAAAATTC
CACTTACCATTGTGCCTATCACATCCCATAAGTTTTGTTTCTGTGTGCCT
TATTTTCACTGAACTCTAAAATCCCCCACTGCCTTTTTTCATTCCCCACA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_k23.b1 MSMg01no096_k23.b1 CHROMAT_FILE:
MSMg01no096_k23.b1 PHD_FILE: MSMg01no096_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:07 2005
         (555 letters)



>mm_chr1_113043287_113044241
          Length = 955

 Score = 1042 bits (539), Expect = 0.0
 Identities = 551/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaacttgaataaatcagtctttctaagtcctatcatagataagggacttagatattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aaaaaacttgaataaatcagtctttctaagtcctatcatagataagggagttagatattc 260

                                                                       
Query: 61  aatcccagtcactgtcatggacagaatgtgaaatcttagctgttggaagaggaagagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcccagtcactgtcatggacagaatgtgaaatcttagctgttggaagaggaagagaca 320

                                                                       
Query: 121 attttctctacaaatgtaaccactgatggtttgatgatgttccagtggaagaatatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttctctacaaatgtaaccactgatggtttgatgatgttccagtggaagaatatttaa 380

                                                                       
Query: 181 gcatcacaagttggtcttgaaaagaactctggacacaaatgtagggactgagaaatggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatcacaagttggtcttgaaaagaactctggacacaaatgtagggactgagaaatggat 440

                                                                       
Query: 241 ctaggaggtgtttgtcatatgaacatgatcaaaaacagtggaataactaaaacaaacatg 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaggaggtgtcggtcatatgaacatgatcaaaaacagtggaataactaaaacaaacatg 500

                                                                       
Query: 301 ttgcataaaatgtagaaagatttaatacaaacattgttttagactttaacaaatgaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcataaaatgtagaaagatttaatacaaacattgttttagactttaacaaatgaaaag 560

                                                                       
Query: 361 cactcaaaattgcatgtgtctgtctcaaatatagaagtaaacccaactataaaactaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactcaaaattgcatgtgtctgtctcaaatatagaagtaaacccaactataaaactaggg 620

                                                                       
Query: 421 tactgattctgaagtgtacacttggtttcaaaaacctaatgatcctacataaattgtcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 tactgattctgaagtgtacacttggtttcaaaaacctaatgatcctacataaattgttag 680

                                                                       
Query: 481 aaatgatggatatatcttcattgctagatgatttaatttacttgaaaataataatgaatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaatgatggatatatcttcattgctagatgatttaatttacttgaaaataataatgaatc 740

                          
Query: 541 aaatgtctcctcacc 555
           |||||||||||||||
Sbjct: 741 aaatgtctcctcacc 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)