BAC Information

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BAC

Clone NameMSMg01-096P04
Chromosome1 (Build37)
Map Location 78,719,291 - 78,719,578
singlet/doubletsinglet
Overlap genenone
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b
Downstream geneLOC620521, Kcne4, LOC100039260, EG545332, Scg2, Ap1s3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096P04.T7 (MSMg01no096_p04.b1)MSMg01-096P04.TJ (MSMg01no096_p04.g1)
ACCAG313503AG313504
length807767
length of high quality
(start - end)
285 (127 - 411)287 (131 - 417)
definitionCHROMAT_FILE: MSMg01no096_p04.b1 PHD_FILE: MSMg01no096_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:30 2005CHROMAT_FILE: MSMg01no096_p04.g1 PHD_FILE: MSMg01no096_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTGGTGGNTCGGGGGTGCCCGCGCGCCTCCCCCTCACAC
AACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAACCGCG
GAATTCTTTGCTGATTCCTCTGAGGAGTTGCCGAACTGCTTATCACAGCT
CACCATATCATTTCACAGGGCGGGACATGGCACCCAGGGAGGCTGAACCC
AAGGCTGGATAGCTGGGTGCTGAAGAGAGCTGGGTTGTGCTTCCCCCAGT
TTTCCATTACAGTGGACTTTCCTCCTTCTCCTTCTGATGGTGGCTTGCAT
ATTCCCTCTTGAAGACGAAATCTTTTTATTTTAAAATTTTTATTATGTAT
TTTCCTCATTTACATTTCCAATGCTATCTCAAAAGTCCCCCATACCCCCC
CCCCATCCCCTACCCACCCACTCCCACCTCTTGGTCCCGGTATTCCCCTG
CACTGGGCCATATAAAGTCCCCCCCCCCAATGGGCCATCTCTTTCCCCTG
ACGGTCGGTTTAGGTCATCTTCCTGATACCCATGCCGCTATATACGTGCA
GCCCCGTTCGCTTCTGGCTTAGCCCCAAGGCTGTTCCCCCTCATTAGGTT
GTTTTCTTCCCTCACTATCTTTGCTCACCTCTCTCTACCTCCCCCATCTG
TCTCGCCCCGGTCATCTCTCCCTCTACCTCGACTGTTCTCATCCCGCCCC
CCAGTGTCTGACCACCCTCCGGTACTTCCCCCCTGCCTACACCCCTTCTC
TTCACCCTCCTCTTCTATCTCCCCCCTTCGTTAAGACCTGTCATGCGTGT
CTGCTCG
TTTTGGGGGTTTTGTTTGTGGGTGGTTGGTTTTCTTCCTCCTCCCCTCAA
TTTATTTCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTTTCCA
TTTCTTAATAGGGTTATTTGGTTTTCTGGAGTCCAACTTCTTGAGGTATA
TATATATATATATAGAACAATATGAACTAACCAGTACCCCCCAGAGCTCC
CTGGGACTAAACCACCAAAGAAAACACACAGAGACTCATGGCTCCAGCTG
CATATGTAGCTGAGGGTGGCCTAGTCAGTCCTCAATGGGAAGAGAGGCCC
TTGGTCCTATGAAGGTTCTATGCCCCATTATGGGGGAATGCCAGGGCCAG
GAAGCAGGAGTGGGTGTGTTGGTGAGCAGGCGGAGTGAGGATGATATAGG
GGATTTTCTCGCATGTTTTTCCCCCCCCCCCCATAGTTTTCTATTTGTAT
TTAACGTCCCTTCTATTTTCCTCCCTGTCCTTTTCCATTATTCTTATCGA
CCTTCGCACTTTGCGCTTTATTTTTTTTGTCTTTCCTCTTCTACTCTTTC
TCGCGCTCTCTTTTCTTCGGCTACCTTTCACTCTCTCTGTTACCTACTCG
CTCCTTTTCTTCTCACCCTCTTCCCTTCCCCCCCCCATCTTCTTTCTCCC
CCTTTCTCTCTCTCTTTTCCCTCCTTTCTTTTCCCCGCACTCTTTCCCCC
TTTTTCTCTTTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_p04.b1 MSMg01no096_p04.b1 CHROMAT_FILE:
MSMg01no096_p04.b1 PHD_FILE: MSMg01no096_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:30 2005
         (285 letters)



>mm_chr1_78719091_78719775
          Length = 685

 Score =  468 bits (242), Expect = e-136
 Identities = 276/290 (95%), Gaps = 7/290 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgccgaactgcttatcacagctcaccatatcatttcacagggcgggacatggcaccca 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgcagaactgcttatcacagctcaccatatcatttcacagggcgggacatggcaccca 260

                                                                       
Query: 61  gggaggctgaacccaaggctggatagctgggtgctgaagagagctgggttgtgcttcccc 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaggctgaacccaaggttggatagctgggtgctgaagagagctgggttgtgcttcccc 320

                                                                       
Query: 121 cagttttccattacagtggactttcctccttctccttctgatggtggcttgcatattccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||
Sbjct: 321 cagttttccattacagtggactttcctccttctccttctgatggtgatttggatattccc 380

                                                                       
Query: 181 tcttgaagacgaaatctttttattttaaaattttt--attatgtattttcctcatttaca 238
           ||||||||| |||||||||||||||  ||||||||  |||||||||||||||||||||||
Sbjct: 381 tcttgaagatgaaatctttttattt--aaatttttttattatgtattttcctcatttaca 438

                                                             
Query: 239 tttccaatgctatctcaaaagtcccccatacccccccccc---atcccct 285
           |||||||||||||| |||||||||||||||||||||||||   |||||||
Sbjct: 439 tttccaatgctatcccaaaagtcccccatacccccccccccccatcccct 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)