BAC Information

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BAC

Clone NameMSMg01-097C01
Chromosome1 (Build37)
Map Location 54,008,156 - 54,008,364
singlet/doubletsinglet
Overlap geneHecw2
Upstream gene1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b
Downstream gene4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097C01.T7 (MSMg01no097_c01.b1)MSMg01-097C01.TJ (MSMg01no097_c01.g1)
ACCAG313638AG313639
length1,076779
length of high quality
(start - end)
---210 (130 - 339)
definitionCHROMAT_FILE: MSMg01no097_c01.b1 PHD_FILE: MSMg01no097_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:45 2005CHROMAT_FILE: MSMg01no097_c01.g1 PHD_FILE: MSMg01no097_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGATAGAATATATTATATGTATTGTTTCTTGTTGTCTGCTCCCCCCCCCC
TCCTCTTATTCTTTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTCCCGAAGCTGCAGNGGNNAATTGATGAGTATTTGCCCTAAAAAGAGG
AGANNNTNNGNNNGAGAGGTGTGGGAGAGAGGAAAANAAGGGAGAAATGA
TAATGCTCCTGTAGATATATGTAGTTATGGTATAGTGTTTGAGTGTGTAG
TATATGTATTAGATGTTATATGTGTTAGAAATTATAGGATTATGATGAAG
TATTGTGTTAGTAATAGGATGGTTAATTTATATATGGTTAAGCTGTAAGN
TTTAGTATAAAATTTATATGGGTATGTTAATTGGAAAATAATTTTAAGTT
TGTGTAGAATAGAATGANTAGAATAAATGATTTGTTTAATGAGAATTTGA
AAAATATTATATTATACATTTTTTTTTTATTGACCACAATACTATTTCTT
ATTCATGCCCTGAATATTCATTGACTTTTATTTTATCTTCGGCCACTTCT
CCCTTTGATACACACGCAGCCAGTTTAATAGTGTGTTTTCATATTCATTC
ACGCCTCCCCTCCACCCACTAGAACTAACTTAGAATGTCTCGAACGCACC
GCCACACCGCACTTACACTGACTTCTTTTTAAGTAGGCCCCATATCCGTC
CCCATGTATCACTCCCTGATGTTCTGACAATCATCGCAGTGTACCTCTTC
TCTCACATTCTACTCGCCGGTGCGCATTTCGCCCATGCTCTACTAGCTNT
TTGTACCTCTCCCCCCTCCGGTACCTGCTAATCCACCCCCGCGTTTCTCC
CATACATATTACCCATCTTCTACTGCACTATTTTTAGATGTGTCCATCGC
CGCCTGGACAACAATCAATACGAACCCTTGGGCCTTGAAGAAACTTATTT
GTTCTTATCTTCTTTTACATCATTGACCTCCCCTGTTGTTATCGTTTAAT
TTGTGCCACGCCAACTCTCTGATAAAATCACGCGAGCACACCTATATGAG
TTGACTCTGTCACCACGCGCCGCCCG
CAAAANACCAACCACCAACACCCTAATCTACAACATTTNCCCTTCTTTCC
TNTCCCTATGATATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAAACCCATGGTGGGTGAAC
AAAAGACTCAAGGTCAGGAAGCTGATCCAGGCAACAGCGTGGCTTTGTGG
GAACAGTGCTAAGCAGCACTAGCCAATGCCTCACGTCTTCCAGGCCAACC
GCTTGCAAAAGTCAAAGGCAACAGAGCTAGAGCTAACATAAGAACAGTAA
AAGACAGTGATTCAACTTTGGTACAGAAGAAAGATAGAAGTGACCGTGGC
CCAGAGAACAAGCCAGTGGACCACACTTCTCAGGGTTTCCACATGGAAAC
TGCAATATTCCCCTTGTGCTTATGATGCATGGATGCTCTGCTGCATCTGG
CTCTGCCCTGCCATGCTGAAGGCCAAAGGTAGTCATAGTCTAGAACTTGT
TCACATTATACGACCTTAAAACTTTTTCTTACTGAGAAGCATATGATACC
ACCAACTTTCTCAAGTCACATATGCTGCTTTCCCCCACTATGACCAAAAA
TTACAAATTTACCTCTAAGAGCTTGGGGAAAAAATCCCGTGCACGAAAAA
CGCCCAACCCTCTTTTAATGTAACGGACGATGGACACATGATCTCAAATT
TCAAAGGGAACATTTCCAAGCAGAAAAAGTCCTTCTTCCGGAACTTGAAA
GAACCAATCAAATTGGTCAAAAGGCGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_c01.g1 MSMg01no097_c01.g1 CHROMAT_FILE:
MSMg01no097_c01.g1 PHD_FILE: MSMg01no097_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:45 2005
         (210 letters)



>mm_chr1_54007956_54008564
          Length = 609

 Score =  360 bits (186), Expect = e-104
 Identities = 204/210 (97%), Gaps = 1/210 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaacccatggtgggtgaacaaaagactcaaggtcaggaagctgatccaggcaacagcg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 caaaacccatggtgggtgaacaaaagactcaagctcaggaagctgatccaggcaacagcg 260

                                                                       
Query: 61  tggctttgtgggaacagtgctaagcagcactagccaatgcctcacgtcttccaggccaac 120
           |||| |||||||||||||||||||||||||| |||||||||||| |||||||||| ||||
Sbjct: 261 tggccttgtgggaacagtgctaagcagcactggccaatgcctcatgtcttccaggtcaac 320

                                                                       
Query: 121 cgcttgcaaaagtcaaaggcaacagagctagagctaacataagaacagtaaaagacagtg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcttgcaaa-gtcaaaggcaacagagctagagctaacataagaacagtaaaagacagtg 379

                                         
Query: 181 attcaactttggtacagaagaaagatagaa 210
           ||||||||||||||||||||||||||||||
Sbjct: 380 attcaactttggtacagaagaaagatagaa 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 609
Length adjustment: 9
Effective length of query: 201
Effective length of database: 600
Effective search space:   120600
Effective search space used:   120600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)