BAC Information

Click to search

BAC

Clone NameMSMg01-097I08
Chromosome1 (Build37)
Map Location 68,326,523 - 68,326,717
singlet/doubletsinglet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097I08.T7 (MSMg01no097_i08.b1)MSMg01-097I08.TJ (MSMg01no097_i08.g1)
ACCAG313929AG313930
length1,190729
length of high quality
(start - end)
---195 (71 - 265)
definitionCHROMAT_FILE: MSMg01no097_i08.b1 PHD_FILE: MSMg01no097_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:17 2005CHROMAT_FILE: MSMg01no097_i08.g1 PHD_FILE: MSMg01no097_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCACCACCCACCCCCCCANACCACNCCACACCACAACCNCNAAAATGN
AGACANGCCNGNNNACCACAAACTAATACTATCATCACAATACACTGTGC
GAGTTNTTGNTGCCACTTTACGGATCTGCGTATGACTCATAATCGTACCA
ATTGAAAGCGGAGAGATGATATTCTTTCTAGTCGGCTCGCAGCCGCTATC
ACACACAGAAATATGGCGATCATATCGGTGGAGGACGGAGACCGCGTGAC
AGATAAAGAAAACGCCGACCCTATCTGTTAATCTTCTATCGTAACTCAAG
GCACCAACACCACGACACACCACCTTTTCATTCTCTGATTGTTATATTTA
ATTATGCACATGGGTTGGTATCTAAANACCTGATCGGTTGCTTATGAGCG
ACACACGTGTAGAGCGTTTAACTAAAATTGGTGGGGGTCATTATGGGCGC
AATGCCCCAACGGTGGGCGGTTAATGCCGGACACGACAGCGCTGATTCGA
GCGCCNCCTTCCTCCGTCGCATTCATAATCGAGTTAGAATACCTGTCTGG
GGTTTGTTGAACCACCGCACATCTCCGCGTTTGCCTACCATTTACTGCCC
GATAACTCGCTTGCAGTGTCTCTAAGCTAGGTCGCGCACCGCGGTTGGTG
TCTGTTCTCTTTCGTGATCGCCCACGACAGGCGAGCGCTTAGCGAAATTG
GACGAAACACTTCACAAATAATTGATCCCCACGTTTACCACCCGCGCTAT
TGTGGATGGCGCAGTGGTGTGTAACTCATATTCCATTCGGGCGCCACCTG
AGAGTTCTTTCTGTTTTCTATAACCGCTCCGTTGCGGCGGTGTGAGCGGG
TGGTGATGTAATGACTATACAGGGGCGGGCGCCCATAAATAGATAGTGCG
CGTGTCGCGGTGCCGGCCGTTCATATTGTANATCCTCATACTGTGTGGTG
CGGGTGTTGTACTGCGCGCTACCCGGTTGATAGCTGTCTGCGTGTTTGCC
TGCCCGCCGGTAACTATCACCCTTCGATGGTCGCACGGTCGGTTGTGAGC
AAGACTTCGAACAGATGGTACGTACGACGCCGCTAGATGTATTACGCCGT
ATCTGCATGGGGTGCGTGAGTCCCTGCGTACCTTAGGGTGTTAGTTCGTC
CGGTCTTCGCAAACCAAACACCGTGTAGAGCCGCGCGCCC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTGTCTTGGGACAACCTGTTCTTGGGGT
ACAGGATTTGGCATTTAAATAAATAGCAGCATCAGACCAATCCCCAACAA
CTAGCAATATAATTATTTATTGTTATCAGTCTAGGTAGATAGGCACATTG
CAAATGAGAAAGCAGGGAATCTGAAAGACTGGGATGGATGGATGGATGGA
TGGATGGATGGATGGATGCCCCCCCCCCGCCTAATTTCCTCGGCCCGGCG
TCACTAAATCAACGATTTTTTTTTTCTGGGAGTCCCCTTTTTGCGTCCAC
CCCTGGTTTTTTTTTTTATCCTCCCCCCCCCCAAGGTGGTACCGCGGGGA
CACGCCGCCCCTTTTTCACCGCCGTTGTCATCTACCTCCCTCTGCGCCTT
CTACCCCCGCTGGGTCCCAAGCCCCACAAATATAAACAGCAGCGTGTTTC
CCACCCCACAGAAACACACCCGGGAATGCGTTATCACACCCTGTACAAAC
ACTAAAGAAACAACTTTCCCCCCCCGGCAAAGAAGACAACACGCTAGTAA
CACGATAAAACCACAGTATGTGACGCGGCGGCAAAATGGAAACAATAGAT
GACCAACCACACCCTATGCCAAACAAGGAACTGAGTGGCCAAATATTAAG
AAGGGTGACTAAAAGTCCGTTTCTATAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_i08.g1 MSMg01no097_i08.g1 CHROMAT_FILE:
MSMg01no097_i08.g1 PHD_FILE: MSMg01no097_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:17 2005
         (195 letters)



>mm_chr1_68326357_68326951
          Length = 595

 Score =  377 bits (195), Expect = e-109
 Identities = 195/195 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgtcttgggacaacctgttcttggggtacaggatttggcatttaaataaatagcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acttgtcttgggacaacctgttcttggggtacaggatttggcatttaaataaatagcagc 302

                                                                       
Query: 61  atcagaccaatccccaacaactagcaatataattatttattgttatcagtctaggtagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcagaccaatccccaacaactagcaatataattatttattgttatcagtctaggtagat 242

                                                                       
Query: 121 aggcacattgcaaatgagaaagcagggaatctgaaagactgggatggatggatggatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggcacattgcaaatgagaaagcagggaatctgaaagactgggatggatggatggatgga 182

                          
Query: 181 tggatggatggatgg 195
           |||||||||||||||
Sbjct: 181 tggatggatggatgg 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 10
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)