Query= MSMg01no097_k20.b1 MSMg01no097_k20.b1 CHROMAT_FILE:
MSMg01no097_k20.b1 PHD_FILE: MSMg01no097_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:30 2005
(291 letters)
>mm_chr1_167001356_167002041
Length = 686
Score = 385 bits (199), Expect = e-111
Identities = 255/285 (89%), Gaps = 21/285 (7%)
Strand = Plus / Plus
Query: 1 cacagctcttctagaatgttctctagcagctagccagagaaggctgtctgaaggccaaac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 cacagctcttctagaatgttctctagcagctagccagagaaggctgtctgaagggcaaac 260
Query: 61 acagctcttttagaatttttttttctttctttctgattttgatcagaaaacccaagaatt 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 acagctcttttagaattttt-----tttctttctgattttgatcagaaaacccaagaatt 315
Query: 121 tctttctttttttttttttt--ttttttttttgggttttggcttttcgagacagggtagc 178
|||||||||||||||||||| ||| ||| |||||||||||||||| |
Sbjct: 316 tctttcttttttttttttttccttt--------ggt------ttttcgagacagggtaac 361
Query: 179 cctggctgtcctggaacttactctgtaaaccaggctggcctcgaactcagaaatctacct 238
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 362 cctggctgtcctggaacttactctgtaaaccaggctggcctcaaactcagaaatccgcct 421
Query: 239 gcctctgcctcctgagtgttgggattaaaggcgtgcatcaccaac 283
|||||||||||||||||| |||||||||||| | ||| |||||||
Sbjct: 422 gcctctgcctcctgagtgctgggattaaaggtgggcaccaccaac 466
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 686
Length adjustment: 9
Effective length of query: 282
Effective length of database: 677
Effective search space: 190914
Effective search space used: 190914
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no097_k20.g1 MSMg01no097_k20.g1 CHROMAT_FILE:
MSMg01no097_k20.g1 PHD_FILE: MSMg01no097_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:30 2005
(545 letters)
>mm_chr1_167131667_167132611
Length = 945
Score = 832 bits (430), Expect = 0.0
Identities = 460/470 (97%), Gaps = 4/470 (0%)
Strand = Plus / Minus
Query: 1 catagctggtctttgatatgaattcatccagcctgcgagtagcctgtggcg-gggcgatt 59
|||||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||||
Sbjct: 468 catagctggtctttgatatgaattcatccagcctgcaagtagcctgtgg-gtgggtgatt 410
Query: 60 ctgagaagagaat-gttccttaagataataggtattttggtaaagagcattcatctatag 118
||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 409 ctgagaagagaatcg-tccttaagataataggtattttgataaagagcattcatctatag 351
Query: 119 atgaattgggatcctggtaatttttgaggttcagacttgggtacatctagggaaagaaaa 178
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 350 atgaattgggatcctggtattttttgaggttcagacttgggtacatttagggaaagaaaa 291
Query: 179 gaatggacacctgttagttacattatgcagtaatattttggtaaatgtggtggtcactat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gaatggacacctgttagttacattatgcagtaatattttggtaaatgtggtggtcactat 231
Query: 239 gccaagcacttataaaaaaatggcattactggctggggagctggctcagtttgtaaagtg 298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gccaagcacttaaaaaaaaatggcattactggctggggagctggctcagtttgtaaagtg 171
Query: 299 cttgttacccaagcaagagggcctgaattcaatccccagcaactacataaaaatccacgc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 cttgttacccaagcaagagggcctgaattcaatccccagcaactacataaaaatccacgc 111
Query: 359 acagtggtgcatacctgtaatcccagaggcacagacaggtcatggttgtttgcataacaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 acagtggtgcatacctgtaatcccagaggcacagacaggtcatggttgtttgcataacaa 51
Query: 419 catcacgctggtgctcatgggccaatctgtgtagctgaatcaacgagctc 468
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 catcacgctggtgctcatgggccaatctgtgtagctgaatcaacgagctc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
