CCCCTTTCTTTNNATCTNNCTTCTTCCTCTTATACCTTAACCCACCATAT
TTTTNTTACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXGCGCGGAATTCTCCAATTTTCCACAATTTTATTTCAAGGCTGACCAA
TTGTGTTACATAGAGGTAAAAGAACAATTCTCAAAGACTGAAATGATTCA
CATCCATCCTGACAAATGGAATGGGGAAGCAACTCTGTCTCAGCTGAGAT
AGTCATCACTGCACATACTTCCTTGCAGAAAACAATTTTAATGTTTACAA
AAGATATAAAGCAATCCTCAAAAAAAGGATTTATTCATCTTGAAATATAG
CTTAGTTTCCTTCCAGTGTTTTTAGTTTATATTTAAGCGCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTTTTTCTCTCTCCCTCCCCCCCCCTCTCTCTC
TCTGAGTGAGAATGAGAGTATGTGTTCCTTTTTATATCACCTCCCATCAG
GACTTCCTGATTATCTCTCTCCGTAGAATAATATACCCGTCTGTCCCCAA
AGAATCTCCATTATTCTCCTTTTTACGCACTCCCCTATTTTTTCACCCTG
TCTTCAAATTCATTAAACACATTTAACCCTCTTTTTTATCGACTTTATAA
ATTTTTACCCTCCTATTTTCCCAAATTTTTTGTTATGTCACACATATAAT
TCCGTGATCCCACATCGATCCTCCGACTAGATATCCATGCGCGCATAATA
TTTTTTCCCCCCCCTTTTTTATCCCCACCTCCGTTAATACACTCCG

CCTCCCCCAACAACCCCNCACTTCCCCTCCCCTCCCTTCTCCCTTTCATA
CCCATTCTATGATAAGCGTAGCCTGGTGGCCGCCTGTTTCTCAAATATAG
GTGAACTATAGAATTTCCGCAAAATTCTAGGCTCAAACAATGTACCTACT
ATGAGCCAAACAGTATTTACTGGATAGTTCTACACTGGTCCTGTTTAAAC
TGAATGGACTATTAAATAAAATGAAACGGTATGAAGAACATAAACTTATT
CTGAGGCACAAACTGAGGTCAAAGCAGTGAAACAGAAATAGAACTGGAAT
TGAAATTTGTCACAGTGCATGTACACATACATTAAATTGTCAAAGAAATA
CATTAATAAAAATAAATACATACTTTTATAACAGGCCTTCAGAATAATAT
ACACAAGAGAACAAGCATACTTTACATTACCATCATAACAAAACAGATAA
ATTTTAAAAATCCCCACTTAATCTCAAACTTTGTTTTATCATGCTCTCTC
TCCATCTCATTTTGCTATGCCTTTTGTGCTGAACGATCCACATATATACC
CTACCCACTAACGTATCTCACGGCTGATTAACCCCCCCTCATGTATGCCA
ATGTAAAACCTCCACTCTCCTATCTATAGATCCAGGTTTTTACACAACTT
TTTGTTGTAACTCCCAGTTTACAAACCCCCTCGAAATCCTGAAAAACCCA
CGTTTCATGTTGTTTCATGTTGTCAGCAAACCGGCCCGACCATAAATGAC
TGCCCTTTCTAA

Query= MSMg01no097_l22.b1 MSMg01no097_l22.b1 CHROMAT_FILE:
MSMg01no097_l22.b1 PHD_FILE: MSMg01no097_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:35 2005
         (248 letters)



>mm_chr1_110031075_110031722
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatttcaaggctgaccaattgtgttacatagaggtaaaagaacaattctcaaagactg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tttatttcaaggctgaccaattgtgttacatagaggtaaaagaacaatgctcaaagactg 260

                                                                       
Query: 61  aaatgattcacatccatcctgacaaatggaatggggaagcaactctgtctcagctgagat 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgattcacattcatcctgacaaatggaatggggaagcaactctgtctcagctgagat 320

                                                                       
Query: 121 agtcatcactgcacatacttccttgcagaaaacaattttaatgtttacaaaagatataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcatcactgcacatacttccttgcagaaaacaattttaatgtttacaaaagatataaa 380

                                                                       
Query: 181 gcaatcctcaaaaaaaggatttattcatcttgaaatatagcttagtttccttccagtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaatcctcaaaaaaaggatttattcatcttgaaatatagcttagtttccttccagtgtt 440

                   
Query: 241 tttagttt 248
           ||||||||
Sbjct: 441 tttagttt 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no097_l22.g1 MSMg01no097_l22.g1 CHROMAT_FILE:
MSMg01no097_l22.g1 PHD_FILE: MSMg01no097_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:36 2005
         (101 letters)



>mm_chr1_110182411_110182911
          Length = 501

 Score =  172 bits (89), Expect = 4e-48
 Identities = 98/101 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctcaaacaatgtacctactatgagccaaacagtatttactggatagttctacactggtc 60
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 301 gctcaaacaatatacctactatgagccaaacagtatttactggatagatctacactggtc 242

                                                    
Query: 61  ctgtttaaactgaatggactattaaataaaatgaaacggta 101
           ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 241 ctgtttaaactgaatggactattaaataaaacgaaacggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 501
Length adjustment: 8
Effective length of query: 93
Effective length of database: 493
Effective search space:    45849
Effective search space used:    45849
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)