BAC Information

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BAC

Clone NameMSMg01-097N02
Chromosome1 (Build37)
Map Location 55,004,966 - 55,005,372
singlet/doubletsinglet
Overlap genenone
Upstream geneHecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44
Downstream geneSf3b1, Coq10b, Hspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097N02.T7 (MSMg01no097_n02.b1)MSMg01-097N02.TJ (MSMg01no097_n02.g1)
ACCAG314153AG314154
length1,463720
length of high quality
(start - end)
---510 (73 - 582)
definitionCHROMAT_FILE: MSMg01no097_n02.b1 PHD_FILE: MSMg01no097_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:41 2005CHROMAT_FILE: MSMg01no097_n02.g1 PHD_FILE: MSMg01no097_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGCGTTGGGGGAAGTGACTGGAGTCGTAGACCGCGCGCGCCGTGACTAC
TATCTTCCTCGCCCCGCCCCTGTGCGTGCGTGGTGGACGTCGGTGTGCCG
ACAGCTTCGCGTTTGATGCGCTAGAGAGGTGATTTTGTCNTGCGTAGCTC
CCCACTAGCGACGCCGCGCACGGGANGGTGATATGTGTGCTTGTTTCTCC
TCTCCTCCTCTTCTCAGCCGCGCGATCTCCGCGCTTATCCCTGTGCTATT
ACCCCGCGCAGCCTACACACCGGTGACGCGNCGCGACGGGTTTCGCCGTT
CTTAACGACGATTGCGCGGGCGGCGTTGCGCGGTCTCGGCTGGTTGCCGC
GCGTCGCGGTTTCCGCGCTGCGGCGGAGACGGCGCAGGAGAGGTGGGTGG
CGCGGGGCTGTCTCTGTGGCGAGCGCTGCCTTCGCTACCCGGATATAGCC
GCCGCTCATGCCCCGTTTTGAGCCCGTATATCCGCTCGTGTGCATTATCG
CCTTCGCCTGTGTGTTACACCGCGCGGTTGCGTATCGCCCTGCCGCTCTA
TGATCACCTTTTGCTGTACTCGTCTGGCCGTGCGTCTGCGCCCGTGAGTT
CGGTGCGTGTCTCTACTCCGCCAATACGGCGTCGAGTGTGTCGCGGGCAT
AGGCTGCGCGGCGTGTATGGCGCGCGCGCGGCGCGAAGGGTATCGGCGTG
TTGGTGGTCGTGTTGATCTTTTGCGTTCGCGCCGCGCCGTGTAATACAAC
GCCGGATCATTTCTCCGCCATCATCATTTGCCCGCCGCCGCCGCGTCGCG
TTAGAAGCCGCCTTCGCGCCGTTGTGTGGGGCTGACCNACCGCGACTCGC
CGTTGATGCCTCTGTGTTGTGGGCGTCCGTGTGTCTCCGGGATTCGCCGA
CCTGCATCCACCTCACGCGTTTCGGTTTAGTTTGGCTTCTCGCGGTGCAC
GCCACGCGCGCCGCCGCGCGTCGTGCTCGCCAACCTAGTTTTTTCTTGCG
GCGGACGGACCCGCATCTATCCGCGTGCGCTCNCTGTATTAAGTCCCTCG
TACACAGCCCATATGAAGCCGAGCCTCGCTGTCGCGCCGCGTTGCTAGTG
ACATTCTCCCCCCGACTCCGTTTATATTGTGTATGCGCCCCGCGCGCGTT
GTCTCGCGCGTTCGATTCTTCCTCGCCTTCCTGCGCGCGCGTCGCCGTTA
TGTCTCCATACGTTCCCCGCGCGCGCGCCGTGCGTACCCGTGGCGAGGCG
GCGTCGCATAATTAGATATCTATATCACACGTCCTGTTTTCTCCTACGCG
TGTGCTAGTGTATGCCGCGCGATACCTCGCGCGGCGCGGGCGAATGGTCC
TCTGCTGTGTAGTGTACGCGTCGCGCCCAGCGCTGCCCCGGAACATATAC
GATCGCGATGACGCGTATATATTATAAATATATACTCACCCATCTCCCCN
CCTCGCGTCCTCN
CATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGACTGACAAGGAGAAGCTGCCTGAGT
GCCTGAGGGGTCCTTCTGTCCCTACCTCCCCAGCACTGGAATTACAAATG
CCACACACTCAGCTTTTTTTTTTTTAAAGATTTATTTATTACATATAAGT
ACACTGTAGTTGTTTTCAGACACACCACAAGAGGGCGTCAGATCTCGTTA
CAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGATCT
TCGGAAGAGCAGTCAGGTGCTCTTACCACTGAGCCATCTCACCAGCCCCA
CACACTCAGCTTTTTTAAAGGGGGTCTTAGAGATCAAACTTGAGTCTCCA
TGCCTGTTTATCCATTTTAACTGACAGCTGTTTTCCCAGCCCCAGCTATC
ACTACTACTCAGCACTGCCTAAAGAACCAAGCTGATACAAGATTTAGACA
GGAACTGGGCGTGATGGTACATGTGTTTAATCCCAGCACTCAGCTACATG
AAATCCTGCCTCAGAAATTAAATAAAAGTTAGAGGACATGAGATAGGAGG
AAGAAAGGAAGGAAAGAAAAAAGGAAGGAAGGATAGAATGCAAGCACGCC
ACCCTTCTTCCCTTTTCTCTCTCCTTCCCCCCCTTATTTTTACCCCTCTC
TCTGTTTTTTTCTCACCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_n02.g1 MSMg01no097_n02.g1 CHROMAT_FILE:
MSMg01no097_n02.g1 PHD_FILE: MSMg01no097_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:41 2005
         (510 letters)



>mm_chr1_55004663_55005572
          Length = 910

 Score =  756 bits (391), Expect = 0.0
 Identities = 403/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 104 aaagatttatttattacatataagtacactgtagttgttttcagacacaccacaagaggg 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aaagatttatttattacatataagtacactgtagttgttttcagacacaccacaagaggg 363

                                                                       
Query: 164 cgtcagatctcgttacagatggttgtgagccaccatgtggttgctgggatttgaactctg 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cgtcagatctcgttacagatggttgtgagccaccatgtggttgctgggatttgaactctg 423

                                                                       
Query: 224 gatcttcggaagagcagtcaggtgctcttaccactgagccatctcaccagccccacacac 283
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gaccttcggaagagcagtcaggtgctcttaccactgagccatctcaccagccccacacac 483

                                                                       
Query: 284 tcagcttttttaaagggggtcttagagatcaaacttgagtctccatgcctgtttatccat 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 484 tcagcttttttaaagggggtcttagagatcaaacttgagtctccatgcctgtccatccat 543

                                                                       
Query: 344 tttaactgacagctgttttcccagccccagctatcactactactcagcactgcctaaaga 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tttaactgacagctgttttcccagccccagctatcactactactcagcactgcctaaaga 603

                                                                       
Query: 404 accaagctgatacaagatttagacaggaactgggcgtgatggtacatgtgtttaatccca 463
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aacaagctgatacaagatttagacaggaactgggcgtgatggtacatgtgtttaatccca 663

                                                          
Query: 464 gcactcagctacatgaaatcctgcctcagaaattaaataaaagttag 510
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gcactcagctacatgaaatcctgcctcagaaattaaataaaagttag 710



 Score =  217 bits (112), Expect = 2e-60
 Identities = 169/190 (88%), Gaps = 6/190 (3%)
 Strand = Plus / Minus

                                                                       
Query: 92  ttttttttttttaaa----gatttatttattacatataagtacactgtagttgttttcag 147
           |||||||||||||||     ||||||||||||||| |||||||||||||| ||| |||||
Sbjct: 302 ttttttttttttaaacatttatttatttattacatgtaagtacactgtagctgtcttcag 243

                                                                       
Query: 148 acacaccacaagagggcgtcagatctcgttacagatggttgtgagccaccatgtggttgc 207
           |||| ||| |||||| | |||||| || |||  |||||||||||||||||||||||||||
Sbjct: 242 acactccagaagaggacatcagatttcattatggatggttgtgagccaccatgtggttgc 183

                                                                       
Query: 208 tgggatttgaactctggatcttcggaagagcagtcaggtgctctta-ccactgagccatc 266
           |||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||||
Sbjct: 182 tgggatttgaactcgggaccttcggaagagcagtc-ggtgctcttaaccactgagccatc 124

                     
Query: 267 tcaccagccc 276
           || |||||||
Sbjct: 123 tcgccagccc 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)