Query= MSMg01no098_a03.b1 MSMg01no098_a03.b1 CHROMAT_FILE:
MSMg01no098_a03.b1 PHD_FILE: MSMg01no098_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:57 2005
(647 letters)
>mm_chr1_12390284_12391330
Length = 1047
Score = 1195 bits (618), Expect = 0.0
Identities = 636/644 (98%), Gaps = 5/644 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggactaccacagtgagactggaggtaggaataggagagaatagctggaagct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggactaccacagtgagactggaggtaggaataggagagaatagctggaagct 264
Query: 65 tatgatgatcaaggtaatcaacaacagacgctgtctccaacaaggcagaagatgaggact 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgatgatcaaggcaatcaacaacagacgctgtctccaacaaggcagaagatgaggact 324
Query: 125 agcgtctaaggttggtctgtcatttctgtatgcacggcacagaatgcatatgtctgtact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcgtctaaggttggtctgtcatttctgtatgcacggcacagaatgcatatgtctgtact 384
Query: 185 cacacatggacacacacatacacacacatcacacacaggcacaaagattattctttaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacacatggacacacacatacacacacatcacacacaggcacaaagattattctttaaga 444
Query: 245 aattatcaatattaacaatacagttgttaaagaaatctgaattgttataagcaatcaata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattatcaatattaacaatacagttgttaaagaaatctgaattgttataagcaatcaata 504
Query: 305 taaaaattaacatttttctttaaaaatacactaggaagagggttggggtgctttatcagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaaaattaacatttttctttaaaaatacactaggaagagggttggggtgctttatcagg 564
Query: 365 tcgttcatgatcacaaggcatgtaaatgcctcacaatttattctgccccctaaatattgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcgttcatgatcacaaggcatgtaaatgcctcacaatttattctgccccctaaatattgt 624
Query: 425 tagttcttcatgatattttattaaagaatttttttaaattttt-aaaattttatagatgc 483
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 625 tagttcttcatgatattttattaaagaatttttttaattttttgaaaattttatagatgc 684
Query: 484 ataaagtgaatttttatcatatttgctcctgctcctcccaaattcaacccctctcccaac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataaagtgaatttttatcatatttgctcctgctcctcccaaattcaacccctctcccaac 744
Query: 544 tttatgctctctctcactctcacgctctctcgctctctcgatctctctctctctctctct 603
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttatgctctctctcgctctcacgctctctcgctctctcgatctctctctctctctctct 804
Query: 604 ctctcataaccaactaattccaaaattctaatttgaactactca 647
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 805 c----ataaccaactaattccaaaattctaatttgaactactca 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_a03.g1 MSMg01no098_a03.g1 CHROMAT_FILE:
MSMg01no098_a03.g1 PHD_FILE: MSMg01no098_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:58 2005
(455 letters)
>mm_chr1_12455834_12456688
Length = 855
Score = 857 bits (443), Expect = 0.0
Identities = 452/455 (99%)
Strand = Plus / Minus
Query: 1 agtgtggtgtgtcctccacacccagaggaggaattgtggcaaggaatggctcagacatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 agtgtggtgtgtcctccacacccagaggaggaattgtggcaaggaatggctcagacatgg 596
Query: 61 tagggtcctatagaaaggagatttctctacagatgtgacagggatatctagaaatgtgtg 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tagggttctatagaaaggagatttctctacagatgtgacagggatatctagaaatgtgtg 536
Query: 121 tgtggttgggagttgttattgtttgtggcataattgtatgttaatttttatgcaacccga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tgtggttgggagttgttattgtttgtggcataattgtatgttaatttttatgcaacccga 476
Query: 181 ggagagccttgaatttttgagatcctctgccttccacctctgtagttttggaattagtaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 475 ggagagccttgaatttttgagatcctctgccttccacctctgtagttttggaattagtga 416
Query: 241 tgggaccaaacctaatttatgtagagctgaagattgagtcaaagcttcttgcaagcttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgggaccaaacctaatttatgtagagctgaagattgagtcaaagcttcttgcaagcttgt 356
Query: 301 aagtactcgaccagacaactctcagccacagaaagggagttctgtaaacctgcagtaact 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 355 aagtactcgaccagacaactctcagccacagaaagggaattctgtaaacctgcagtaact 296
Query: 361 agccaatgcatccacaaatgagtaagtctataaaataccttaaacatggtatatgcaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agccaatgcatccacaaatgagtaagtctataaaataccttaaacatggtatatgcaagg 236
Query: 421 acaagcattaacctaggaaaagagttgagcattag 455
|||||||||||||||||||||||||||||||||||
Sbjct: 235 acaagcattaacctaggaaaagagttgagcattag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space: 376025
Effective search space used: 376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
