BAC Information

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BAC

Clone NameMSMg01-098A06
Chromosome1 (Build37)
Map Location 147,725,590 - 147,725,832
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667877, LOC625057, LOC383570
Downstream geneLOC383571, B830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098A06.T7 (MSMg01no098_a06.b1)MSMg01-098A06.TJ (MSMg01no098_a06.g1)
ACCAG314304AG314305
length686706
length of high quality
(start - end)
628 (19 - 646)244 (57 - 300)
definitionCHROMAT_FILE: MSMg01no098_a06.b1 PHD_FILE: MSMg01no098_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:58 2005CHROMAT_FILE: MSMg01no098_a06.g1 PHD_FILE: MSMg01no098_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AGCTCCTATACGGAGAGGATCCGCGGAATTCTCACCTGACCGATACCGAA
TGGCTGAGAAACACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAA
ATGCAAATCAAAACATCCCTGAGATTCCATCTCACACCTGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAACAGATGCTGTTGAGGATGTGGAGAAA
GAGGAACACTCCTCCACTGTTGTTGGGATTGCAAGCTTGTACAACCACTC
TGGAAATCAGTCTGGCAGTTTCTCAGAAAATTGGACATGGTACTACTGGA
GGATCCCACAATACCTCTCTTGGGCATATATCTAGAAGATGTTCCAACTA
GTAAGAAAGTAACATGCTCCACTATGTTCATAGAAGCCTTATTTATAATA
GCCAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
AAAAATGTGGTACATTTAGACAATGGAGTACTACTCAGCTATTAAAAAGA
AAGAATTTATGAAATTCCTAGGCAAATGGTTGGACCTGAAGAGCATTATC
CTGAGTGAGGTAACCCAATCACAAAAGAACTCAAATGATATATACTCACT
GATAAGTGGATATTAGCCCAGAAAATTAGAGTACCCAAGATATAAGTTCC
AATTTGCAAAACACATGAATCTCAAGAAGAACTAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCAGCCTCCATGAAATGGTATCTTAATTTTTTTGTTGTTTTAA
ATTTGTGTTAGTATTAGCATATGTTAACTATACAAAGTAATATGTTTTAT
TTACATAGCATTTTCAGATATGTATTTCATATGTTTGGACCATAGCAATA
TTAAACAATCCAGTGTTAACAATAATGTTTTCACCCTACCATATTTTATT
GCTTTATTTAAATACATTTAATTTAATAAATTAATAAAAAAAGTTGTGTG
CTTGTGCTGAGCCACAATACCACAACTAGAAGTACATTTTCTCAAAAAAT
AATATAACCTTGGGATTGAGAGTTATGAGCAAATTTCCTGCAACCTGTAT
GTGTGTTAGTATTTGTGTGTGCGTGTGCGTGTGTGTTCGCCCCTCCTTTT
ATCCCCTTTCCTCACTTCTTTTCTTTTTCCCTCCTTCTTTCTTCTCCCCT
CCTCCCCTTTTTCTTCATCCTCCTTATTCCCCTTTTTCCTTTCCCTCCAT
TTCTTTCCTCTCCCCTCCTCTCCCTTTCCCTTTTTCCTCACACCTCCCTC
TTTATATCCTTTTTCTCCCCCTTCCCCCCCTTTTCTCCTTTTACCCTTTC
CCCTCCTCCTCCTTTCTTCCATTTACTCTTTCCCCTCCCCTCCCTCCCCT
ATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_a06.g1 MSMg01no098_a06.g1 CHROMAT_FILE:
MSMg01no098_a06.g1 PHD_FILE: MSMg01no098_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:58 2005
         (244 letters)



>mm_chr1_147725390_147726032
          Length = 643

 Score =  426 bits (220), Expect = e-124
 Identities = 238/244 (97%), Gaps = 2/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagcctccatgaaatggtatcttaatttttttgttgttttaaatttgtgttagtatta 60
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 201 ttcagcctccatgaaatggtatcttaa-ttttttgttgttttaaatttttgttagtatta 259

                                                                       
Query: 61  gcatatgttaactatacaaagtaatatgttttatttacatagcattttcagatatgtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 260 gcatatgttaactatacaaagtaatatgttttatttacatagcattttcagatatatatt 319

                                                                       
Query: 121 tcatatgtttggaccatagcaatattaaacaatccagtgttaacaataatgttttcaccc 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcatatgtttggaccatagcaatgttaaacaatccagtgttaacaataatgttttcaccc 379

                                                                       
Query: 181 taccatattttattgctttatttaaatacatttaatttaataaattaataaaaaaa-gtt 239
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 380 taccatattttattgttttatttaaatacatttaatttaataaattaataaaaaaaagtt 439

               
Query: 240 gtgt 243
           ||||
Sbjct: 440 gtgt 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space:   148990
Effective search space used:   148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)