BAC Information

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BAC

Clone NameMSMg01-098C23
Chromosome1 (Build37)
Map Location 31,934,212 - 31,934,723
singlet/doubletsinglet
Overlap genenone
Upstream genePtp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
Downstream geneLOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098C23.T7 (MSMg01no098_c23.b1)MSMg01-098C23.TJ (MSMg01no098_c23.g1)
ACCAG314430AG314431
length690772
length of high quality
(start - end)
503 (44 - 546)317 (125 - 441)
definitionCHROMAT_FILE: MSMg01no098_c23.b1 PHD_FILE: MSMg01no098_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:12 2005CHROMAT_FILE: MSMg01no098_c23.g1 PHD_FILE: MSMg01no098_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATCGAAGAGGATCCGCGGAATTCTTCAATTGCTAAAAGTTACTC
AGAAAGGTGATTCTACATGCACCTCATAGCGATCACTAAAACATTATATG
GGCTAGAATTTGCGACAGAGGGAAAGATATTAAGATAGGAAAGACTTATA
AAACTTAACAGCTAACTGTATCATATCACTATTGTAGGCTATTCAATGTG
CTTTTACCATATTTCCTAAAGACCCTTTATTTTCTAGATAATGCTACTTT
AGCATGTTCTGGTGTTCCAACTATGAACCTCACTCATACCTGTTATGGAG
TCTGCTGTGAGAGGATAAAATTGATTTGATAGTCACATTAATAAAGCAAA
TTACAAATAAAATAAAGAACACAATAATCCAAGACAAGAGATCATTACCA
ATGCATCTGAGGTTCATGCATAAAGGATAATGAACAACCTGTAGACAATT
GATGGCCCAGTGGATATCAACTCACTGGGACTGGGAACATATAGAATGAT
CAGCATAACAATGACAGACAAAGGAAATTAAGGGCCTTTTCATTTCTTTT
TAATTTTATTATTATCATTACTTTATTTATAACATTATTACTTTATTACT
TTATTTGTTTATCTGTTTAGTCAAAGACAGTCATCTGTTACGACTGAGTG
CTACTTTAATGGCTTCAGTCATAACTTGTTCTTCTGAAGA
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCTTCTTTTTAAN
AACTATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGA
GAAACACCTGAAAATATGTTCAGCATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGTTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAAC
ACACCTTCACTGATGGCAGGATTGCAAGCTTATACAACCACTCTGGAAAT
CAGTCTGGGAGTGCCTCATATAACTTAACATAGTACTACTGGAGGATCCT
GTAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAAATAGTAAGAA
AAAAACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAATCCAGATGCCCCTCAACATAGGAATGGATACCGAAAATG
TGGTACATTTACACAATGGAGGACTACTCAGCTATTAAAAAGAATGAATT
TATGAAACTCCTAACCAAATGGATGGACCCTGTAAGGGCATTATCCTGAG
TGAGGTAACCCATTCACAAATAAACTCAAATGATATGTACTCACTGATAA
CTGGACTACATCCCGAAATCCTAGAATATTTACGATTTTAGTTTCCTTTT
TGCCCAATACCCGTAATTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_c23.b1 MSMg01no098_c23.b1 CHROMAT_FILE:
MSMg01no098_c23.b1 PHD_FILE: MSMg01no098_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:12 2005
         (503 letters)



>mm_chr1_31934021_31934923
          Length = 903

 Score =  799 bits (413), Expect = 0.0
 Identities = 484/513 (94%), Gaps = 11/513 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttactcagaaaggtgattctacatgcacctcatagcgatcactaaaacattatatgggc 60
           |||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||
Sbjct: 192 gttactcagaaaggtgattctacatgcacctcatagtgatcactaaaacatggtatgggc 251

                                                                       
Query: 61  tagaatttgcgacagagggaaagatattaagataggaaagacttataaaacttaacagct 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 252 tagaatttgcgacagagggaaagatattaagataggaaagacatataaaacttaacaact 311

                                                                       
Query: 121 aactgtatcatatcactattgtaggctattcaatgtgcttttaccatatttcctaaagac 180
           |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aactgtattatatcaccattgtaggctattcaatgtgcttttaccatatttcctaaagac 371

                                                                       
Query: 181 cctttattttctag---------ataatgctactttagcatgttctggtgttccaactat 231
           | |||||||| |||         |||||||||||||||||||||||||||||||||| ||
Sbjct: 372 catttattttttaggtcacactgataatgctactttagcatgttctggtgttccaaccat 431

                                                                       
Query: 232 gaacctcactcatacctgttatggagt-ctgctgtgagaggataaaattgatttgatagt 290
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 432 gaacctcactcatacctgttatggagtac-gctgtgagaggataaaattgatttgatagt 490

                                                                       
Query: 291 cacattaataaagcaaattacaaataaaataaagaacacaataatccaagacaagagatc 350
           |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 491 cacattcataaagcaaattacaaataaaagaaagaacacaataatccaagacaagagatc 550

                                                                       
Query: 351 attaccaatgcatctgaggttcatgcataaaggataatgaacaacctgtagacaattgat 410
           |||||  || ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 551 attactgatacatctgaggttcatgcataaaggatgatgaacaacctgtagacaattgat 610

                                                                       
Query: 411 ggcccagtggatatcaactcactgggactgggaacatatagaatgatcagcataacaatg 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 611 ggcccagtggatatcaactcactgggactgggaacatatagaatgatcagcataagaatg 670

                                            
Query: 471 acagacaaaggaaattaagggccttttcatttc 503
           |||||||||| ||||||||||||||||||||||
Sbjct: 671 acagacaaagaaaattaagggccttttcatttc 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)