CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTTTCTCAGCTATGGCCACTCTTTCTTGCTCCAAATAAACTCT
GTTATTCCCTCTCAGATTAGAGCTATGTTTTTGCATCAGTTTTAGTCTAA
GTGTTGGGGCTGTCTCCAAGGTCAGTAAAGAAAAGGGACAGAACACTGGG
GCTATAGCTTCCAGTCAGCCATGCAAGGGCAGTCAGCCATGCGATACAGC
CTGCGCCAAGTCCTTCTAACCCTTGGAGATGCGGTTTCCTAAAAGAATTG
GAAAGAAAGAGTGAGTCTCCCTTGGTGGCTGGCTGTCCAACCAGAATGTG
GCTCTTCCTCCATTCTTATCCGGGGGCCTTTCTGTGACACTCATATTCCA
CCAAGTTGTTCTTTGTGATTCCCCATCCCCCATCACTTAGAAGCCCAAGT
TCCCCAGCATTGCTCACAGTGTCTCCCAAGGTCTACCCTGTCCATTTTCC
CAGATCCACTTCACCCCTTGCTTTTACCCAGCCACACAGTCCTATTTTAA
GGCTTCAAGCTTGACCTGCTACAAGAAGGAGCCCATTTATTTATGAGCTG
GGCTTTTCTGTGCCTGCATCTTCATGTATGCTTGGATTAAACCTTTAGAT
CTCAGTGCCAAGAAATCTCCTCAGGAAAGTTTCTTAACCTCCTGACAAGG
CTAA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCACCTGAGGAAACTGAATGGCTGAGAAGCA
CCTGAAAAAAAATGTACAGCATCGTTAGTCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATAAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGTTTACAAGCTTGTACAACCACTCTGGAAATCAGC
CTGGTGGTTCCTCAGAAAATTGGACATAGTACTAACAGAGGATCCCACAA
TACCTCTCCTGGGCATATATCCAGAAGATGTTCCAATCGGTAAGAAGGAC
ACATACTCCACTACATTCATAGTAGCCTCATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACCCAATCACAAAAGAACTCACATTATATGTACTCATTGATAAGTGGAT
ATTACCCCAGAAACTTAGAATACCCAAGATATAAGATACAATTTCCAAAA
CACATGA

Query= MSMg01no098_f01.b1 MSMg01no098_f01.b1 CHROMAT_FILE:
MSMg01no098_f01.b1 PHD_FILE: MSMg01no098_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:23 2005
         (605 letters)



>mm_chr1_161365181_161366186
          Length = 1006

 Score = 1149 bits (594), Expect = 0.0
 Identities = 600/602 (99%), Gaps = 1/602 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtttctcagctatggccactctttcttgctcc-aaataaactctgttattcc 63
           |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 806 gaattcatgtttctgagctatggccactctttcttgctccaaaataaactctgttattcc 747

                                                                       
Query: 64  ctctcagattagagctatgtttttgcatcagttttagtctaagtgttggggctgtctcca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ctctcagattagagctatgtttttgcatcagttttagtctaagtgttggggctgtctcca 687

                                                                       
Query: 124 aggtcagtaaagaaaagggacagaacactggggctatagcttccagtcagccatgcaagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aggtcagtaaagaaaagggacagaacactggggctatagcttccagtcagccatgcaagg 627

                                                                       
Query: 184 gcagtcagccatgcgatacagcctgcgccaagtccttctaacccttggagatgcggtttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gcagtcagccatgcgatacagcctgcgccaagtccttctaacccttggagatgcggtttc 567

                                                                       
Query: 244 ctaaaagaattggaaagaaagagtgagtctcccttggtggctggctgtccaaccagaatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctaaaagaattggaaagaaagagtgagtctcccttggtggctggctgtccaaccagaatg 507

                                                                       
Query: 304 tggctcttcctccattcttatccgggggcctttctgtgacactcatattccaccaagttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tggctcttcctccattcttatccgggggcctttctgtgacactcatattccaccaagttg 447

                                                                       
Query: 364 ttctttgtgattccccatcccccatcacttagaagcccaagttccccagcattgctcaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttctttgtgattccccatcccccatcacttagaagcccaagttccccagcattgctcaca 387

                                                                       
Query: 424 gtgtctcccaaggtctaccctgtccattttcccagatccacttcaccccttgcttttacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtgtctcccaaggtctaccctgtccattttcccagatccacttcaccccttgcttttacc 327

                                                                       
Query: 484 cagccacacagtcctattttaaggcttcaagcttgacctgctacaagaaggagcccattt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cagccacacagtcctattttaaggcttcaagcttgacctgctacaagaaggagcccattt 267

                                                                       
Query: 544 atttatgagctgggcttttctgtgcctgcatcttcatgtatgcttggattaaacctttag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atttatgagctgggcttttctgtgcctgcatcttcatgtatgcttggattaaacctttag 207

             
Query: 604 at 605
           ||
Sbjct: 206 at 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1006
Length adjustment: 10
Effective length of query: 595
Effective length of database: 996
Effective search space:   592620
Effective search space used:   592620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)