Query= MSMg01no098_g02.b1 MSMg01no098_g02.b1 CHROMAT_FILE:
MSMg01no098_g02.b1 PHD_FILE: MSMg01no098_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:28 2005
(611 letters)
>mm_chr1_36171941_36172951
Length = 1011
Score = 1029 bits (532), Expect = 0.0
Identities = 604/670 (90%), Gaps = 66/670 (9%)
Strand = Plus / Plus
Query: 8 gaattcctcagacccaggtataatgttccaaatttggaaagcctggttaaagacgtcacc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 gaattcctcagacccaggtataatgttccaaatttggaaagcctggttaaagacgtcacc 201
Query: 68 tgtattcaggttaaccccaacggggggaaggaagatctctcaaggaatctgggcttgagg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgtattcaggttaaccccaacggggggaaggaagatctctcaaggaatctgggcttgagg 261
Query: 128 acgcctgggaaacattgggagttggactttaccgaaatctgagct--------------- 172
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acgcctgggaaacattgggagttggactttaccgaaatctgagctacttttttttttttt 321
Query: 173 --------------------ggtgtttgtagacaccttctcaagttgggtgcagttttgg 212
||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttttgccgtaagtatttgctggtgtttgtagacaccttctcaagttgggtgcagttttgg 381
Query: 213 agtctgacaataacctgccctttgtggtcaaagtgtctgataatctgacaaagaattgca 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agtctgacaataacctgccctttgtggtcaaagtgtctgataatctgacaaagaattgca 441
Query: 273 tatatattagttgtgcatagaggggcagagcccgagtcagggaaaaaggacaaagagaac 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tatatattagttgtgcatagaggggcagagcccgagtcagggaaaaaggacaaagagaac 501
Query: 333 tctcaaggagactctgaccaaattggtcctagaaactggtgaaaaaagtgggccaggctc 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tctcaaggagactctgaccaaattggtcctagaaactggtgaaaaaagtgggccaggctc 561
Query: 393 ctccccttgctcatagcctaacatactccttagtgga------------ctt-------- 432
||||||||||||||||||||||||||||||||||||| |||
Sbjct: 562 ctccccttgctcatagcctaacatactccttagtggaagcgaccggctccttttgacgat 621
Query: 433 -----------agcctcccattctttccaaactccaagaaattcctcaagcagaattgtc 481
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtctcagagacagcctcccattctttccaaactccaagaaattcctcaagcagaattgtc 681
Query: 482 tagatactcccgtctcaagccctcgtaggctttgccggaagctcgccatgcctttgacca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tagatactcccgtctcaagccctcgtaggctttgccggaagctcgccatgcctttgacca 741
Query: 542 cactcggaagggaactctgttatctcccacctccaaacctgcccaccagttccagccagg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cactcggaagggaactctgttatctcccacctccaaacctgcccaccagttccagccagg 801
Query: 602 atacttggtt 611
||||||||||
Sbjct: 802 atacttggtt 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_g02.g1 MSMg01no098_g02.g1 CHROMAT_FILE:
MSMg01no098_g02.g1 PHD_FILE: MSMg01no098_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:28 2005
(422 letters)
>mm_chr1_36338654_36339475
Length = 822
Score = 681 bits (352), Expect = 0.0
Identities = 376/384 (97%)
Strand = Plus / Minus
Query: 39 cccagcctctgcctctcaagtgctgttaaggttggctatgaactgtctccccatgtttag 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 cccagcctctgcctctcaagtgctgttaaggttggctatgaactgtctccccatgtttag 763
Query: 99 atgaacacttggtccccaactcctggtgctactttaggaggctatggaatcttcaggagg 158
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 762 atgaacacttggtccccaactcctggtgctactttaggaggctatggaatcttctggagg 703
Query: 159 ctcgcctgggagagaagtactccactagaatcaagccctcagcgtttaacacaggcctgc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ctcgcctgggagagaagtactccactagaatcaagccctcagcgtttaacacaggcctgc 643
Query: 219 ttcctgccttgctctctgctgacccaccatgatctgaacagactctgacgttacgcacat 278
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttcctgccttgctttctgctgacccaccatgatctgaacagactctgacgttacgcacat 583
Query: 279 cctgcagccgtgggacgagctattccaccaagtgcttctcaccttggtggactgcaaccc 338
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 582 cctgcagccgtgggacgagctattccgccgagtgcttctcaccttggtggactgcaaccc 523
Query: 339 actgaaaccatgaggcagaataaacttctctgactccaagtattttgtctctgtcaagca 398
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 522 actgaaaccacgaggcagaataaacttctctgaccccaagtattttgtctctgtcaagta 463
Query: 399 ttttgggatagcaatgtaaaactc 422
|||||||||||||||| |||||||
Sbjct: 462 ttttgggatagcaatgcaaaactc 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
