BAC Information

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BAC

Clone NameMSMg01-098H16
Chromosome1 (Build37)
Map Location 133,993,216 - 134,107,092
singlet/doubletdoublet
Overlap genePctk3, LOC100042221
Upstream geneMapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4
Downstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098H16.T7 (MSMg01no098_h16.b1)MSMg01-098H16.TJ (MSMg01no098_h16.g1)
ACCAG314648AG314649
length672757
length of high quality
(start - end)
427 (38 - 464)441 (130 - 570)
definitionCHROMAT_FILE: MSMg01no098_h16.b1 PHD_FILE: MSMg01no098_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:36 2005CHROMAT_FILE: MSMg01no098_h16.g1 PHD_FILE: MSMg01no098_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,106,688 - 134,107,092)(133,993,216 - 133,993,656)
sequence
CCTTCCAGGAGAGATCCGCGGAATTCATGATCCCAGCACTCATTTCTTCA
GGGTGAAAACGGATGCAGATAGCAGCGGGCAAGCATCCAAGCTGACAGTT
GAGTCAAAAGCATAGGATGTAGGTCTGTCCTGGTTAAGCCTTCATGAATA
CCTTGTGCCAGGCATTAAGGAAGCTCAGCTGGGAGAAGAGAGCCATCCTG
ACCATGACCAGTCAGCCCACTGCTGTCTACAAAAACTGCGCATCATCTGT
AATCCTCCGCCTTCAGGAAGCTCAAGGAGGAGGATCAGATGTCCGAGGCC
ACCCCAGGTAGCAGAGTAAGTACCTAGGCCAGCCTGGGCAATAGAGAAAG
ATCCTGCCTAAAGACCATAGTTTATCAATTCATGTACAGCTGTCACGTGA
CTTGCCTTAAACCAGCCCTTCCTTATAGAAGGCTGGCTTTGAGGCTATGG
CTGATGGCTTAGGTTCTCTGTCCTTTCTTTGGGGCCCCATTTCCTCGTAG
TAAGTAGAATCTCTGCCCTACCCCCTCCATCCTTTTTAGAGCTCTATTGA
TATACAATTCATAACACCTGGTAATCTTTGCCCTGCATGCAGCTCAGACT
TTCTTCCCTTGCCAGATCGACAATCACGCATTCTGTCTATACTTCTGACA
ACCCTACGCATAGATCTTTATC
NNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCNNNCCNCTGTCTTC
NNNNTNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTCTTCCCTAGATCCTCA
GATGCAAAGATCCAGGGATCCACAATCTGCATGTCTGTCTCCTTCCCATA
CCCCACCACTCAGCACTGGAAGCTGAGCCTAAGGAGGCAGAGGCCTGGCT
TAAGAGACACTGGTGGACATACCCTCCTATCCAGCCAGTGCTGCCTCCTC
CTGGCCCGTATTCACAGAGAGGTTTAGCAAGAGGAGAAAGCCCAACCTGG
GAACTCTGATCCCTGGCTTTCTTTATCACCTTCACTTGCAGCCTGGGTGG
TAAGGACTAACCTTGGATGTGGCAAGGACACAAACAGAGACTCCGGACTA
ATTTAGATTCCCCCTACACTCAAAATCTTCCGTCAATAGGCAATCGTGAC
TAACATTTACTGATCCCTTAATGTGTGCCAAGCCTTTTCTGTGTTGGGAA
GTGAGTACATTTATTATATTCTGCACATAGGATACTGAGGACCAGGGCGG
CTCAGTTAGCTAGTTGTCCAGTAAGGACATGAACTCTATGTCCTTAACCC
ATGAAACTGTCCTGCCAGGGTTATGCTGTCTACTTCGGAGTTCTGAAAAA
AACCTAACATCTGAACTTGTTTCTGCTCATAGTCATCTTATTTGTATCCC
ACGTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_h16.b1 MSMg01no098_h16.b1 CHROMAT_FILE:
MSMg01no098_h16.b1 PHD_FILE: MSMg01no098_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:36 2005
         (427 letters)



>mm_chr1_134106688_134107514
          Length = 827

 Score =  768 bits (397), Expect = 0.0
 Identities = 403/405 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcatttcttcagggtgaaaacggatgcagatagcagcgggcaagcatccaagctgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 405 actcatttcttcagggtgaaaacggatgcagatagcagcgggcaagcatgcaagctgaca 346

                                                                       
Query: 61  gttgagtcaaaagcataggatgtaggtctgtcctggttaagccttcatgaataccttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gttgagtcaaaagcataggatgtaggtctgtcctggttaagccttcatgaataccttgtg 286

                                                                       
Query: 121 ccaggcattaaggaagctcagctgggagaagagagccatcctgaccatgaccagtcagcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 285 ccaggcattaaggaagctcagctgggagaagagagccatcctgaccatgaccagtcagtc 226

                                                                       
Query: 181 cactgctgtctacaaaaactgcgcatcatctgtaatcctccgccttcaggaagctcaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cactgctgtctacaaaaactgcgcatcatctgtaatcctccgccttcaggaagctcaagg 166

                                                                       
Query: 241 aggaggatcagatgtccgaggccaccccaggtagcagagtaagtacctaggccagcctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 aggaggatcagatgtccgaggccaccccaggtagcagagtaagtacctaggccagcctgg 106

                                                                       
Query: 301 gcaatagagaaagatcctgcctaaagaccatagtttatcaattcatgtacagctgtcacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gcaatagagaaagatcctgcctaaagaccatagtttatcaattcatgtacagctgtcacg 46

                                                        
Query: 361 tgacttgccttaaaccagcccttccttatagaaggctggctttga 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  tgacttgccttaaaccagcccttccttatagaaggctggctttga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no098_h16.g1 MSMg01no098_h16.g1 CHROMAT_FILE:
MSMg01no098_h16.g1 PHD_FILE: MSMg01no098_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:36 2005
         (441 letters)



>mm_chr1_133993016_133993856
          Length = 841

 Score =  845 bits (437), Expect = 0.0
 Identities = 440/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttcttccctagatcctcagatgcaaagatccagggatccacaatctgcatgtctgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttcttccctagatcctcagatgcaaagatccagggatccacaatctgcatgtctgtc 260

                                                                       
Query: 61  tccttcccataccccaccactcagcactggaagctgagcctaaggaggcagaggcctggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttcccataccccaccactcagcactggaagctgagcctaaggaggcagaggcctggc 320

                                                                       
Query: 121 ttaagagacactggtggacataccctcctatccagccagtgctgcctcctcctggcccgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagagacactggtggacataccctcctatccagccagtgctgcctcctcctggcccgt 380

                                                                       
Query: 181 attcacagagaggtttagcaagaggagaaagcccaacctgggaactctgatccctggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcacagagaggtttagcaagaggagaaagcccaacctgggaactctgatccctggctt 440

                                                                       
Query: 241 tctttatcaccttcacttgcagcctgggtggtaaggactaaccttggatgtggcaaggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctttatcaccttcacttgcagcctgggtggtaaggactaaccttggatgtggcaaggac 500

                                                                       
Query: 301 acaaacagagactccggactaatttagattccccctacactcaaaatcttccgtcaatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaacagagactccggactaatttagattccccctacactcaaaatcttccgtcaatag 560

                                                                       
Query: 361 gcaatcgtgactaacatttactgatcccttaatgtgtgccaagccttttctgtgttggga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaatcgtgactaacatttactgatcccttaatgtgtgccaagccttttctgtgttggga 620

                                
Query: 421 agtgagtacatttattatatt 441
           ||||||||| |||||||||||
Sbjct: 621 agtgagtacgtttattatatt 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)