BAC Information

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BAC

Clone NameMSMg01-098I18
Chromosome1 (Build37)
Map Location 60,237,947 - 60,238,161
singlet/doubletsinglet
Overlap geneNbeal1
Upstream geneAls2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf
Downstream geneCyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098I18.T7 (MSMg01no098_i18.b1)MSMg01-098I18.TJ (MSMg01no098_i18.g1)
ACCAG314698AG314699
length765760
length of high quality
(start - end)
325 (110 - 434)215 (132 - 346)
definitionCHROMAT_FILE: MSMg01no098_i18.b1 PHD_FILE: MSMg01no098_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:42 2005CHROMAT_FILE: MSMg01no098_i18.g1 PHD_FILE: MSMg01no098_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTTTCCCTTCCCNCCCCCCCCCTCTCCCCCTTTCCNCNNNTTTTC
CCAACTTTCCCAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCACTATTACCCCAGAACATTGCCCCTAGGCAG
GGTTACTTATTACCAGCCTGTCTAGTCATGTGCCTCGCCCACAGATTGAC
CACACCCACAGGAGGACCTGAAGGCCCTCAGCTTTCACATTTGGCAGACA
TCAACATCTGTACAAGCAGGAAGTAAAAGTTGAGGTTGGATATAAAGAAC
CTGATCAGTGTTATGGGGCTCCCAGCACAAAGTCAGTCTACAACCACTGG
GAGCTCTTCTCTCCTCTCTCTTCTCTCCCCTCCCCTCCCCTCCCCTCCCC
TTCCCTTTCCTTTTCTTTCTTATTTCTTGCTCCGCTTCTCTGAAACACAG
TCTCTCTATGTAGCCCTGGCTGTTGTGGAACTCAATTTGTATAGCAAGCT
GGCATCACATGCATAGATCTGTCCAGTCCTGCCTTCTGAGTGCTGGGATT
AAAGGGCATGTACAACCACCACCGGTTCAGGGTTTCTTCCTTTTCTCACC
AGTGTCAAGCCTTTGTGCCCAACCTGCCTTAACCCGATCTGACCATCTAT
CATGTGGCATCAGATACCCCCACATCCCCATTATATGGTCTATCACAATA
CTGAATGTACCACTTACTAACAGTTTTCACACTCGGCCGGCTGCAAAGCC
CCATCTTTGCGCATC
NNNNNNNNNNNNNNNNNNTTTTTTTNNCCCCCCCNNCTTNNNNTACTCAC
TTTTTATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCGGGCCCTCCCCCCACG
CCCTGCCCTGCAACGCAGCAAACATTCCCAGCAACTTTTAAGAAGCTGGC
GAGAAATCTCGGATATTTGTTGTGTTTGATCTGTGCTCCTGGTTAAGGGA
AGGCGTGAGTAGGGAGCCGTCTTCCTTCCCATCTACAGCAGTTTTGGTTG
TGAATCTGCCTGGAAGGTTTTAGTATTTTATGTTGATCATTAGTCGTGGT
GTGCCAAACAGGAGTTTCTGGAATATCTAATCACATTAAAAATTTATCCC
TTTGAATGGCGTGATCTAGTCACACGGATCATCTGGATTCTTTTTTTTTC
AAATGCGGCTTAATTAACCTCAGGACATTTTTGAATTTCACAGACGGATT
TGGGAGACCAGCTACCCCTGATGAAGAATTGTTGGAATACCTGCTGAAAT
CGATCCTTACCGACCTGACACTCTCCTACTTGACCTACCAATTTCTTTCT
CTGCTCTTTTTTGCCCAATCCCCCGCTTTTGTATTTTATTGTATAGTCTG
ATAAACTTGGTTAACATTTTTATATGACTTGGCCCTTTATTCGTCCCTTT
TGACGAACCTATTATTTACTTTACTGGTAAATCCCAACTGTATATCCTTA
CATAGGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_i18.g1 MSMg01no098_i18.g1 CHROMAT_FILE:
MSMg01no098_i18.g1 PHD_FILE: MSMg01no098_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:42 2005
         (215 letters)



>mm_chr1_60237747_60238361
          Length = 615

 Score =  400 bits (207), Expect = e-116
 Identities = 213/215 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcgggccctccccccacgccctgccctgcaacgcagcaaacattcccagcaacttttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcgggccctccccccacgccctgccctgcaacgcagcaaacattcccagcaacttttaa 260

                                                                       
Query: 61  gaagctggcgagaaatctcggatatttgttgtgtttgatctgtgctcctggttaagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 gaagctggcgagaaatctcggatatttgttgtgtttgatctgtgctcctggttaaaggaa 320

                                                                       
Query: 121 ggcgtgagtagggagccgtcttccttcccatctacagcagttttggttgtgaatctgcct 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ggcgtgagtagggagccgtcttccttcccatctaccgcagttttggttgtgaatctgcct 380

                                              
Query: 181 ggaaggttttagtattttatgttgatcattagtcg 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaggttttagtattttatgttgatcattagtcg 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)