BAC Information

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BAC

Clone NameMSMg01-098M10
Chromosome1 (Build37)
Map Location 195,620,335 - 195,620,868
singlet/doubletsinglet
Overlap genenone
Upstream geneA730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208, EG623172, Plxna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098M10.T7 (MSMg01no098_m10.b1)MSMg01-098M10.TJ (MSMg01no098_m10.g1)
ACCAG314871AG314872
length695684
length of high quality
(start - end)
534 (56 - 589)454 (54 - 507)
definitionCHROMAT_FILE: MSMg01no098_m10.b1 PHD_FILE: MSMg01no098_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:59 2005CHROMAT_FILE: MSMg01no098_m10.g1 PHD_FILE: MSMg01no098_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGGCGCTATACGACTCCTATCGGGAGAGGATCCGCGGAATTCTGTCTT
CCCTAGCCCGCTCTGCCAGCTGACAGCAGCTTTCACCTTGAATCCTTCAG
TCACCTTTCTCTAAAAATCCCTTTGCAGCAACGCTAATAGCAATAGCTTG
GCCATCTTGCCTGTAGTTGGAGTATGTGCAAGTAGAGGTGACTTGAACTA
CAGAATAAATGACCTATCCATAGGACCACACTTTAAAAACAGATGTAGTT
TTCCATTTCCCACTTCACAGTATAGATTTGGGACATGGGCTGATTTCTAG
GATGAGTGTTTGACAGGAAGGGGAGAAAAAAGTCCAGGAGGAGATGATAA
CAATGCTTCTTTCCTGTGTGTCAGGTTGAAGAATTTCTGTACTGATAGGC
ACTGACGCTCTGTGTAAGGGAAAACAGAGAACGAGCTGCCGAACAAACCA
TGAGGAATGGTCTAGCAAAGAGGCCAGTTACTGAGGCTGCTTCCAGAGGC
TCGTGATGATCGCTACTGAAGTGTGAGCATGTTGTATTTCCTATGCTCCT
GTTTTAGAATCTGCCTTCAAAGCATATTTCCCTGAGCTGGGAACTCCCCT
TCGTTTAACAGCATTTTAAACAACTTTCCTACAATGGGTGTCTTAGTTAG
GGTTTTACTGCTGTGAACAGACACCTTGACCCAGTCAGTCTTGCT
GGCGGCCGCCTTTCAACAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCTTCTTATTAAGTGTACCTCTAATCTAATTAGATGGTTGTTTGTTAC
TCCAAGATATTAGTAAGTGCATCTATTGTACCTTTAGAGATGTCTTGCTA
TTTTTCTCATTACTGTGATTTGTAGACAGTATATCTGAGTAGAACTATTG
ATTGGTTTTCCCCTTGGCAAGCTTATAAACCTCCACTGGCACTGAGACCT
AGTCTTTAGTGGGAGACTTCCAGGTCAGTCCCAGATCAATCTCTCCATAG
GTTAACGGCATAGCTTATATTATTTTGAGAGTCTCTTGGGATCCCCTGAT
CAACCTTTTGAAAGAATATTTTCCATGTTAGACACTGGGGACTTCTACTA
TTTTATACTACACATTTATATGAAAGTGACATTTTAAGCATTGACAATTA
TAAAGTTGAAATATCAGTCTACTCTGAAAAATATTGAAGGTGCTCTGTAT
CCTGCTGTATCATATATTTAGCCAAGGATCTAATTCTTTATGCTAAACTA
CTGAAGCATATCCATTGTTAGACCATATAAACTTGCTTTCATTTTAATCA
ATGGCAAAATTATATGATCAGCCAATGATTATTTTACAAACCACCTTGTG
ATTTACTACCTACACACATCTTGGTCTATATGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_m10.b1 MSMg01no098_m10.b1 CHROMAT_FILE:
MSMg01no098_m10.b1 PHD_FILE: MSMg01no098_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:59 2005
         (534 letters)



>mm_chr1_195620135_195621068
          Length = 934

 Score =  986 bits (510), Expect = 0.0
 Identities = 528/534 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcccgctctgccagctgacagcagctttcaccttgaatccttcagtcacctttctctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 734 gcccgctctgccagctgacagcagctttcaccttgaatccttcagtcacctttttctaaa 675

                                                                       
Query: 61  aatccctttgcagcaacgctaatagcaatagcttggccatcttgcctgtagttggagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aatccctttgcagcaacgctaatagcaatagcttggccatcttgcctgtagttggagtat 615

                                                                       
Query: 121 gtgcaagtagaggtgacttgaactacagaataaatgacctatccataggaccacacttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gtgcaagtagaggtgacttgaactacagaataaatgacctatccataggaccacacttta 555

                                                                       
Query: 181 aaaacagatgtagttttccatttcccacttcacagtatagatttgggacatgggctgatt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 554 aaaacagatgtagttttccatttcccacttcacagtatagatttgggatatgggctgatt 495

                                                                       
Query: 241 tctaggatgagtgtttgacaggaaggggagaaaaaagtccaggaggagatgataacaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tctaggatgagtgtttgacaggaaggggagaaaaaagtccaggaggagatgataacaatg 435

                                                                       
Query: 301 cttctttcctgtgtgtcaggttgaagaatttctgtactgataggcactgacgctctgtgt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 434 cttctttcctgtgtgtcaggttgaagaatttctgtactgataggtactgacgctctgtgt 375

                                                                       
Query: 361 aagggaaaacagagaacgagctgccgaacaaaccatgaggaatggtctagcaaagaggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aagggaaaacagagaacgagctgccgaacaaaccatgaggaatggtctagcaaagaggcc 315

                                                                       
Query: 421 agttactgaggctgcttccagaggctcgtgatgatcgctactgaagtgtgagcatgttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 314 agttactgaggctgcttccagaggctcgtgatgatcgctactgaagtttgagcatgttgt 255

                                                                 
Query: 481 atttcctatgctcctgttttagaatctgccttcaaagcatatttccctgagctg 534
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 254 atttcttatgctcctgttttagaatctgtcttcaaagcatatttccctgagctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)