BAC Information

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BAC

Clone NameMSMg01-098N17
Chromosome1 (Build37)
Map Location 3,467,785 - 3,468,298
singlet/doubletsinglet
Overlap geneXkr4, LOC100038975
Upstream genenone
Downstream geneLOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098N17.T7 (MSMg01no098_n17.b1)MSMg01-098N17.TJ (MSMg01no098_n17.g1)
ACCAG314929AG314930
length729729
length of high quality
(start - end)
516 (74 - 589)444 (74 - 517)
definitionCHROMAT_FILE: MSMg01no098_n17.b1 PHD_FILE: MSMg01no098_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:06 2005CHROMAT_FILE: MSMg01no098_n17.g1 PHD_FILE: MSMg01no098_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTCTGACCAAAAGAATAGATTAATTAACTATTTGCCATAATAGC
AGCTGAACAGACACACCATCTGGAGCAAATCTGAGGGCATGAGAATGTTT
CCTCTGTACAAACTAGTGCTGGCTGGGCCAGTGGAGTACTATTTGGGGTT
AGAAAGCACAGAAATCAAGGTTGACTCAGGTTAATATTGGATCGGGCAGG
ATCACAGATGGATTGCGTGAGAGCATGCTTAGTCCAGCCAGACCGAAAGG
CTGGAAGATAAAACTATGCTAGAATCCCAGATAGAATGCAAAGACCCCAT
CTTTGACTTCACTGTTTCTTAGGTTTTTCAATTACAAAGTCATTGGACAG
AAACATCTTTAAGGCAGCACTTACCCAGTTCTATGCTTCACGCACTGCTT
TTCCACCTGAAGTTACTGTTGTGGGTTTGGTTTAAGGAACCCTGAATTTA
TCTCTCCTTCCTCTCCTCTTCTTTGTAAGATCAAAAGCAGTCAGCTGGGT
GATTGCTCTGACAGTGGTAGCACTTGATCTACTCTTGCGTGAAATGCCCC
AGCCACCATGGAAACTGCTTGCTGTGTACAGAAGAAAATTCAGTAAGGCT
TTAAAAATGGTTTTATGTGCTTGAGTTTTTGGCCTGCACATATGTTTGTG
CACCATTTGCCTGCCTGGTGCTTGAAAAG
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTCAAGTTTCATATCCCCAATAGTG
TGTGAGTGACAAGTAAGGTCGCCCCATTGATTCTTGGTTTCTGACACATC
CTGGAGCATGTACTTTTGGGTCTTGGTTACCTTACTCAGGATGACATTCT
CATGTTCCATCCATTTGCCTGCAAAATTCATCAATCCTTTGTTTTTAATA
GCTGATTAGTATTCAGTTGTGTAGATGTATCATGTTTTCTTTATTCATTC
TTCAGTTTGAGTGACATCTATGTTGTTTCTAGTTTCTGGCTATTACAAAG
AAAGTTGCTATGAACATAGTTGAACAAATGTCTTTGTGGGTTTGTGGGGT
ATCTTTTGGTCATATGCCCAGCCAAGGTATTGCCTGGTCATGAGATTCCC
AGTTTTCTGTGAAAGTACCAAATTGATTTCCAGAATGACTGTACAAGTTT
GTACTTCCAAAGAATGGAGGAGTGCTTCCTTTGATCTACATACAGTATGT
GTTGTCTTTTGAGTGTTTGATCATAGTCATTCTGACAAGTATAAAATGGG
ATCTCAGAGGTGGTTTGATATGCATTTCCCTGACTACTAAGAACTTTGAA
CATTTCTTTAAATGCTCTCAACCATTCGAGATTCCTCTGTTGAGAATTCT
CTGTTTAGATCTGAACATTTTAACTTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_n17.b1 MSMg01no098_n17.b1 CHROMAT_FILE:
MSMg01no098_n17.b1 PHD_FILE: MSMg01no098_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:06 2005
         (516 letters)



>mm_chr1_3467585_3468500
          Length = 916

 Score =  948 bits (490), Expect = 0.0
 Identities = 508/514 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattaattaactatttgccataatagcagctgaacagacacaccatctggagcaaatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattaattaactatttgccataatagcagctgaacagacacaccatctggagcaaatctg 260

                                                                       
Query: 61  agggcatgagaatgtttcctctgtacaaactagtgctggctgggccagtggagtactatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggcatgagaatgtttcctctgtacaaactagtgctggctgggccagtggagtactatt 320

                                                                       
Query: 121 tggggttagaaagcacagaaatcaaggttgactcaggttaatattggatcgggcaggatc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tggggttagaaagcacagaaatcaaggttgactcaggttaatattggatcaggcaggatc 380

                                                                       
Query: 181 acagatggattgcgtgagagcatgcttagtccagccagaccgaaaggctggaagataaaa 240
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 381 acagatggattgcgtgagagcaggcttagtccagccagaccgaagggctggaagataaaa 440

                                                                       
Query: 241 ctatgctagaatcccagatagaatgcaaagaccccatctttgacttcactgtttcttagg 300
           |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatgcaagaatcccaaatagaatgcaaagaccccatctttgacttcactgtttcttagg 500

                                                                       
Query: 301 tttttcaattacaaagtcattggacagaaacatctttaaggcagcacttacccagttcta 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttcaattacaaagtcatttgacagaaacatctttaaggcagcacttacccagttcta 560

                                                                       
Query: 361 tgcttcacgcactgcttttccacctgaagttactgttgtgggtttggtttaaggaaccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcttcacgcactgcttttccacctgaagttactgttgtgggtttggtttaaggaaccct 620

                                                                       
Query: 421 gaatttatctctccttcctctcctcttctttgtaagatcaaaagcagtcagctgggtgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaatttatctctccttcctctcctcttctttgtaagatcaaaagcagtcagctgggtgat 680

                                             
Query: 481 tgctctgacagtggtagcacttgatctactcttg 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctctgacagtggtagcacttgatctactcttg 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)