Query= MSMg01no098_p19.b1 MSMg01no098_p19.b1 CHROMAT_FILE:
MSMg01no098_p19.b1 PHD_FILE: MSMg01no098_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:16 2005
(637 letters)
>mm_chr1_133240226_133241264
Length = 1039
Score = 1189 bits (615), Expect = 0.0
Identities = 630/635 (99%), Gaps = 2/635 (0%)
Strand = Plus / Plus
Query: 5 gaattctctacaa-cccaccaagttgctcatttaagtctctttaactttcaccaataatt 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctacaaacccaccaagttgctcatttaagtctctttaactttcaccaataatt 264
Query: 64 agaaaaaataacttcctaataatggaacttatatgataatgtattcaaatcacttaggag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaaaaataacttcctaataatggaacttatatgataatgtattcaaatcacttaggag 324
Query: 124 agactttaaatttcttaaaacactatacatattggcaaagatatttgaatatagttctca 183
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 agactttaaatttcttaaaacaatatacatattggcaaagatatttgaatatagttctca 384
Query: 184 aaaaccaataaacttaattcccttgccatgatctcttgtgagtgagagggcttctatact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaccaataaacttaattcccttgccatgatctcttgtgagtgagagggcttctatact 444
Query: 244 agctggttaaaagtttccctgatttttt-ctaagtgatttctttaggagcattcctttct 302
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 445 agctggttaaaagtttccctgatttttttctaagtgatttctttaggagcatccctttct 504
Query: 303 ttgagggccccagaagacacatagaacttgtagatgtttttgctttaagtgtcaaggtgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttgagggccccagaagacacatagaacttgtagatgtttttgctttaagtgtcaaggtgg 564
Query: 363 tgtccaagtatgccaggctcaaatcttgtgcatttaaagcttgcttttcagacagttggc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtccaagtatgccaggctcaaatcttgtgcatttaaagcttgcttttcagacagttggc 624
Query: 423 aaaaactcttgattccaaagctcctgtgggcgtcagtgtctactgatgttcttataaggc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaaactcttgattccaaagctcctgtgggcgtcagtgtctactgatgttcttataaggc 684
Query: 483 caaagagtgcccttaccgtgaaataaaactgttccgtctcttgctggttcgctctcctct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caaagagtgcccttaccgtgaaataaaactgttccgtctcttgctggttcgctctcctct 744
Query: 543 tagcaatgctgggcttgctcatgaatgtttcagagacggttgatttgacagactccatgg 602
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 745 tagcaatgctgggcttgctcatgaatgtttcagagacagttgatttgacagactccatgg 804
Query: 603 aattgctatactggaagcagtcagatacatcaaaa 637
|||||||||||||||||||||||||||||||||||
Sbjct: 805 aattgctatactggaagcagtcagatacatcaaaa 839
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1039
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1029
Effective search space: 645183
Effective search space used: 645183
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_p19.g1 MSMg01no098_p19.g1 CHROMAT_FILE:
MSMg01no098_p19.g1 PHD_FILE: MSMg01no098_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:16 2005
(562 letters)
>mm_chr1_133347789_133348750
Length = 962
Score = 746 bits (386), Expect = 0.0
Identities = 407/422 (96%), Gaps = 13/422 (3%)
Strand = Plus / Minus
Query: 141 tttaaggatgcaacccctagtaggtagaccaccctccagtaaaacacacacacacacaca 200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 tttaaggatgcaacccctagtaggtagaccaccctccagtaaaacacacacacacac--- 906
Query: 201 cacacacaagagagacacacttcaaactgtatgaacagaataaactgtttttgatgagtt 260
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ----------agagacacacttcaaactgtatgaacagaataaactgtttttgatgagtt 856
Query: 261 acaaaaaacagagagagacactaaattgtttggtagagaaggagaaatggatctaagagg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 acaaaaaacagagagagacactaaattgtttggtagagaaggagaaatggatctaagagg 796
Query: 321 agtggactggatatgatcaaaatgcattatataaaaccccgaaagaattggacacaacag 380
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 795 agtggactggatatgatcaaaatgcattatataaaacccccaaagaattggacacaacag 736
Query: 381 gtaaataaataattcagagatggactgtgaacttttaagtctatgagatcttgtgtagat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtaaataaataattcagagatggactgtgaacttttaagtctatgagatcttgtgtagat 676
Query: 441 ctctgttgcttttgctctatccgctcctttatgatttctgctaacctcaccctatagtca 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ctctgttgcttttgctctatccgctcctttatgatttctgctaacctcaccctatagtca 616
Query: 501 tttttttctccttagaaatagagaagagtctgataccattcatttatcttaataggttgg 560
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tttttttctccttaggaatagagaagagtctgataccattcatttatcttaataggttgg 556
Query: 561 tc 562
||
Sbjct: 555 tc 554
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
