CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCTCCCTTACATATGATTATAATTTTATCATTTGGGCTTTTTTA
TACTATTCCATACTTCTTATGTGCTTTTTTTCCCCTGTGTTTTTAAACAT
TTTAACAACTCTTGTATATTTAGTCTAGACCCTCTATTTTATTTTTGAAT
TTTGCTATTCTATTCTGATTGATCCATTTTAAGGCTTTCCCTCAAATTTA
GTAGGCCCATTGAGTTGTTCAGTTCCGTATTCATTTCACCTTCAGTTCAC
TTCAGTGTTTTGGTCCAATTATTGACCTGGATTGCCTTCATACCTATATC
CAAGGATGTCTAGCCATTAGAAGGAAATGTCGAGATGTTATCAATAAATG
CTGGTGCTCTATGTGTTAGGAAGTGAAGTGGTAGACAAATGAGTTTGAAA
CGAGTGGAAGAGTGAAGATATCAAGTTGATGGAATTATAGTAATGAAGCA
AAATTCTTGCTCTGCTGCTATCATTTTTACCTCTTTGTTTAGTCTGGTTT
CACTAGATAGCGTATTTTCCCTTTAACACTATTCAATAAGTAATCAATGC
TCCTGAAGATTTTGTATGCACAACTTTTCAATTGTTCTCTTGTGTCAAGA
AAGGAACACAAATCATTTCATTAAAAATAGGCTATGACCAAATACGAGAG
TTT

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCGCCAATTCTTTAACTTCTTTCCTTATTTCTT
CCCTGATCCAGAGATCATTGAGTAGAGAGTTGTTCAATCTCCTGGGATTG
TGTACGCCTTGTGGTATATATGCTGTTCCCCCCCCCCTCCCCCCCCCCCC
CCCCCCTCCCCTTCCTTCCCCCTCCCCCCCCCCCCCCCCCCCCTCCTCCT
CCCCCCCCCCCTTTCCCCCTCCCCCCTTCCCCCCCCCCCCCCCCCCTCTT
CTCCCCCCCCCCTCTCTCCCCCCTCCTTTTCCTTCCTTTCCCCCCTCCCC
CCCCCCCCCCCCCCCCCTCCTTTCCTCCCCCCCCTTCCTCCCCCCCCCCC
CCCTTTTTTTCTCCCTTCCCCCCCCTCCCTTCCCCCCCCCCCTCTCTCCC
CCCTTCCCCCCCCCTCCCTCCCCCTCTCCCCCTTCCCCCCTCTCTCCCCC
CTCCCTCTTCTTCCCCCCCCCCTCTCCCGCCCGTTCTCCCCCCCCCCCCC
CCCCCCCTTTTCTTTCCCCCCCCCTCTCCCCCCTCCCCCTTTTCCTCCCT
CCCCCCCCCCCTCTTTCCTTTTCCTCCCCCCCCCTCTTTCCCCCCCCCCT
CTCTTCCCCCCCCCCCCCCCCCCCCCTTCTTTCCTCCTCCCCCCCCTCCC
CCCTCCTCTTCTCCCCCTCCCCTCTCCCCCCCCCCTCTCCCCTTTCCTTT
TTTTTCCCCCTCCCTCCCTCGCCCCCCCCTTCCCCTCCCCCCCCCCCCCC
CCTCTTTCTCCCCCCCCCCCCCCT

Query= MSMg01no099_a20.b1 MSMg01no099_a20.b1 CHROMAT_FILE:
MSMg01no099_a20.b1 PHD_FILE: MSMg01no099_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:21 2005
         (554 letters)



>mm_chr1_106413219_106414172
          Length = 954

 Score = 1042 bits (539), Expect = 0.0
 Identities = 548/551 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttctcccttacatatgattataattttatcatttgggcttttttatactattc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttctcccttacatatgattataattttatcatttgggcttttttatactattc 263

                                                                       
Query: 64  catacttcttatgtgctttttttcccctgtgtttttaaacattttaacaactcttgtata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catacttcttatgtgctttttttcccctgtgtttttaaacattttaacaactcttgtata 323

                                                                       
Query: 124 tttagtctagaccctctattttatttttgaattttgctattctattctgattgatccatt 183
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 tttagtctagaccctctattttatttttgaattctgctattctattctgattgatccatt 383

                                                                       
Query: 184 ttaaggctttccctcaaatttagtaggcccattgagttgttcagttccgtattcatttca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttaaggctttccctcaaatttagtaggcccattgagttgttcagttccgtattcatttca 443

                                                                       
Query: 244 ccttcagttcacttcagtgttttggtccaattattgacctggattgccttcatacctata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccttcagttcacttcagtgttttggtccaattattgacctggattgccttcatacctata 503

                                                                       
Query: 304 tccaaggatgtctagccattagaaggaaatgtcgagatgttatcaataaatgctggtgct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccaaggatgtctagccattagaaggaaatgtcgagatgttatcaataaatgctggtgct 563

                                                                       
Query: 364 ctatgtgttaggaagtgaagtggtagacaaatgagtttgaaacgagtggaagagtgaaga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctatgtgttaggaagtgaagtggtagacaaatgagtttgaaacgagtggaagagtgaaga 623

                                                                       
Query: 424 tatcaagttgatggaattatagtaatgaagcaaaattcttgctctgctgctatcattttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tatcaagttgatggaattatagtaatgaagcaaaattcttgctctgctgctatcattttt 683

                                                                       
Query: 484 acctctttgtttagtctggtttcactagatagcgtattttccctttaacactattcaata 543
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 684 agctctttgtttagtctggtttcactagatagcgtattatccctttaacactattcaata 743

                      
Query: 544 agtaatcaatg 554
           |||||||||||
Sbjct: 744 agtaatcaatg 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)