BAC Information

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BAC

Clone NameMSMg01-099B14
Chromosome1 (Build37)
Map Location 97,770,678 - 97,771,037
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099B14.T7 (MSMg01no099_b14.b1)MSMg01-099B14.TJ (MSMg01no099_b14.g1)
ACCAG315114AG315115
length720716
length of high quality
(start - end)
456 (46 - 501)360 (77 - 436)
definitionCHROMAT_FILE: MSMg01no099_b14.b1 PHD_FILE: MSMg01no099_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:25 2005CHROMAT_FILE: MSMg01no099_b14.g1 PHD_FILE: MSMg01no099_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACAGAGGCATACCTAAGGGCTAAGAAGCACCTGAAAAAATGT
TCAACATTGTTAATTATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACTAGTCAGAATGGTTAAGATCAAAAATTCATGTGACAGCA
GATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCACCATTGCTGGTGG
GATTGCAAGCTTGTACAACCACTCTGAAAGTCAGTCTGGAGGTACCCCAG
AAAATTGGACATGGTACTACCAGAACATCCAGCAATACCCCTCCTGGGCA
TATACCCAAAATATGTTCCAACTGGTAATAAGGCCACATACTTTACTATG
TTCATAGCAGCCTTATTTATAATAGGCAGAAGCTGGAAAGAACCCACACG
TCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAACACAATAAATTTCTTCCTACCTCTGTTTTC
ATTGCGTCCCATATGTTTGCCCACGTTGTCGACCCCCTTTTTATCATACC
TCTAAAACAGCTTTTAATTTTCCCCCCTTACCCCCCCCCTTGTATCCCTC
CATTTTTTGTCTTACACTGTATCTTCCTCCTCCCACCCTGCTTTTTTGGG
CTTTCGCCCTTGTTTATTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCG
AACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTG
TACGCCACCATGCCCAGCTAAATCTATACCATCTTGATATAGGAATATGA
GCAGAAATGCAGAAGATCAAAGAATAGAAAATAAACATTTGAAGTGATAA
AGAATGAGGAATTTCCTTACATTGACCTAAATATGGACACAGGAGATGAA
AAATTATAAATTGGAGTAAATGTTCTACAAACAGAGAAACTCTAGGTATA
TTATATTGAAACTGTACAAAATCAAACAAGAAGTATCCTTAAAGGAGCCA
GATAGAAATACTTTTTTATTTTTTATTTTAGAAGTGGAAGAACAAATGTA
AGATCTCCTTCTACAATAGCCTTAGAAATTCTACAAAGACAGTTAATGAA
ATACTTATGCCTTAGGTAAAAAAAAAAATCTGTACAATCTTTCTTTTAAA
CTAAAGAGAAAAATAAAACTTCCTCAAGGGAACATTATCTACCTTTTAAC
ATCATGACACCTCGTTATATTATTTTATAGCACGTATATAGTCAAATTGA
CCTGAAACCTACACTTAATATACCTGATGTCGTGTACTATATTTTTTGCG
TACCCAATATGTACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_b14.g1 MSMg01no099_b14.g1 CHROMAT_FILE:
MSMg01no099_b14.g1 PHD_FILE: MSMg01no099_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:25 2005
         (360 letters)



>mm_chr1_97770385_97771144
          Length = 760

 Score =  665 bits (344), Expect = 0.0
 Identities = 356/360 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcctgagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 actttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcctgagtgc 594

                                                                       
Query: 61  tgggattaaaggtgtacgccaccatgcccagctaaatctataccatcttgatataggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgggattaaaggtgtacgccaccatgcccagctaaatctataccatcttgatataggaat 534

                                                                       
Query: 121 atgagcagaaatgcagaagatcaaagaatagaaaataaacatttgaagtgataaagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 533 atgagcagaaatgcagaagatcaaagaatagaaaataaacatttgaagtgataaagaaca 474

                                                                       
Query: 181 aggaatttccttacattgacctaaatatggacacaggagatgaaaaattataaattggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 473 aggaatttccttacattgacctaaatatggacacaggagatgaaaaaatataaattggag 414

                                                                       
Query: 241 taaatgttctacaaacagagaaactctaggtatattatattgaaactgtacaaaatcaaa 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 taaatgttcaacaaacagagaaactctaggtatattatattgaaactgtacaaaatcaaa 354

                                                                       
Query: 301 caagaagtatccttaaaggagccagatagaaatacttttttattttttattttagaagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 caagaagtatccttaaaggagccagatagaaatacttttttattttttattttagaagtg 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)