BAC Information

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BAC

Clone NameMSMg01-099B20
Chromosome1 (Build37)
Map Location 151,913,936 - 151,914,131
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042813, Pla2g4a
Downstream genePtgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099B20.T7 (MSMg01no099_b20.b1)MSMg01-099B20.TJ (MSMg01no099_b20.g1)
ACCAG315126AG315127
length730715
length of high quality
(start - end)
222 (44 - 265)199 (58 - 256)
definitionCHROMAT_FILE: MSMg01no099_b20.b1 PHD_FILE: MSMg01no099_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:27 2005CHROMAT_FILE: MSMg01no099_b20.g1 PHD_FILE: MSMg01no099_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTTTGTGACTCATTTTATTGAGTATTTCCATATGTACATATGTTCT
CAATGTTTTATGAAGGAAACTGTTCTGAAATCCTCTTTCTTTATTGAGTC
TTTATGTGGTTTAGGTATCAGAACAACTGTAGCCTCATAGAATGAGTTTT
GCAATGTTCCTTCTCTTTCTGTTTTGTGGAATAGTTTGAGGAGAATTGGT
ATAGTTCGTTGAAAGTCTGGAAGATTCTGCGCTGAAGCTATCTGTGTTTA
GACTTTGTTTTGTTGTCGTTGTTGAGAGACTTTTAATTACTGCCTCTATT
TCCTTAGATATTATAAATACCTTACATATTTACATAGTTTACCCCCACTT
GATTTAAGTCTTGCTGACCTGGACAAGATAACTGTCCACTTCCTAGATTT
CCCAGTTTTGCGGATTACCGGTTTTTGACTCTTTATCTAATGATTCTTCG
GTTTTTTTTCGTGTGCGTCGCTATGTCCTCCTTTCCCTTTCTGATTTTCT
TATTTTGATTATTCTCCTCCCGTCTTTTTTACTTCACGCCTTCCTATACC
TTTTGCCCAACCTTGCCTTATGTTTTCTATCCCAATTAATTTTCCCTGTT
TTTCGCCCATTTTTTTCTCGAACCCGTCCTCCTTCTGTTTCCTCCCCTTC
TTCTCCTCCCCCCCCTCTTCTTTTCCTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAATAGTGTGCCATGCCGGGTACACAGGTTGACTACTGCTGCAT
GCCTGTGATCCTGGGACTCAGAATGAATAACTTTTGGAGCTTATGAATAG
ATATAGAGACAGCTTTTCTCAGAAGATAAAAATTAAAAATTAAAAAATAA
ACACAAAATCCACATTTTTTTTGAGTTCACATGTGACTAAAAGTTATTGA
CCAACAAGTTGACCAGATTATGGAATAAATTTTGGGTCTCTTGTGGCCAA
ATGGAAATATTGCAACATGCTTAGGGAATCTTTTCCTATAACTTAGGATT
AAATAACTATCCCAAGTGTTCTCTAGTTCTACCACGAATGACTACCCTCC
TTCCTTATATATTTTTATTTCCTTACCATAGGACATGTCTGCAAATTTAT
AACTATCAGAGACGAATTTCTCCCGTTCGAGGCTAACTACGCCTATTACG
GTAGAATATACTCCTCGCTAACCAACCTTTTTCGACTTGAAAAGCCGCCA
CATGTCTGGAGCTGGTTTCCCTGTTTTAACAGGCCGGGTGCCACGCTATT
TGGACAAGACATTCCTGCACCCCACCGGCCTTTTTTTTTTTACCTCTGGT
TATCGCGGCGCCCCTTTATAATTATCCCCCCCCTCCCCGCATTTTTAACC
ACTCGCCACTCTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_b20.g1 MSMg01no099_b20.g1 CHROMAT_FILE:
MSMg01no099_b20.g1 PHD_FILE: MSMg01no099_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:27 2005
         (199 letters)



>mm_chr1_151913734_151914332
          Length = 599

 Score =  358 bits (185), Expect = e-103
 Identities = 194/197 (98%), Gaps = 1/197 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   tagtgtgccatgccgggtacacaggttgactactgctgcatgcctgtgatcctgggactc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tagtgtgccatgccgggtacacaggttgactactgctgcatgcctgtgatcctgggactc 262

                                                                       
Query: 63  agaatgaataacttttggagcttatgaatagatatagagacagcttttctcagaagataa 122
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 263 agaatgaagaacttttggagcttatgaatagatatagagacagcttttctcagaaggtaa 322

                                                                       
Query: 123 aaattaaaaattaaaaaataaacacaaaatccacattttttttgagttcacatgtgacta 182
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 323 aaattaaaaattaaaaaataaacacaaaatccacattttttt-gagttcacatgtgacta 381

                            
Query: 183 aaagttattgaccaaca 199
           |||||||||||||||||
Sbjct: 382 aaagttattgaccaaca 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)