BAC Information

Click to search

BAC

Clone NameMSMg01-099B22
Chromosome1 (Build37)
Map Location 143,418,943 - 143,419,587
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnt2, EG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099B22.T7 (MSMg01no099_b22.b1)MSMg01-099B22.TJ (MSMg01no099_b22.g1)
ACCAG315130AG315131
length7101,528
length of high quality
(start - end)		650 (43 - 692)---
definitionCHROMAT_FILE: MSMg01no099_b22.b1 PHD_FILE: MSMg01no099_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:27 2005CHROMAT_FILE: MSMg01no099_b22.g1 PHD_FILE: MSMg01no099_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATAAAACACTGCCTCAAATCTTAGCGTTTGAAGAAAAAACATAACATT
ACTTTGCCAGGTTTTATATGTCTTCTTGAACTCCCATGTCTACTCAATTA
GACTAATTGTTCTTCTCCCTGTTCCTTAAATAAACATAACAAATCTCAAG
AACTGAACCACACAGAACTGTCCTTTCCAATAAAATAATCTGCCTAAAAT
TGCCTTCATTTTTCACCTGATATTTTAGATTTTAGATATTGTTTTAAAAA
TTGTCATAAAAGCCATTATTCCTAAGCAATTTTAATTTAATTTTATTTTA
TCCTCATATTATTTTATCTTATTTTTGATGTACATAATTTATTTCTAAAG
CAAATCAATTTGTTTTTAAAATACACATGGGCACCAATGTAAAGGTTTAG
TGCATAAAAATACTTGCCTTGCTAGCCCTTTCCCAAGATTTTATTGGTCA
ATTATGTTTCATCTTTTGAATATCTTCTATTAAGTTCGTTAAGCCCATTT
ATTGACCTAGGTGATTTGAAGTTTGGAGTTTTAATTCTTACAGTATGTTA
AATATATATATGTATATGTATTGCAAGTCTTTTCTGACATTCTGGAACTT
TCTAATGCCAGAATCAGTTTATTTTCCACAGCTTTTCTATTCAATGCCAC
AGTATTTGAT

GGGCTCGTCCTTTGTGGCGTGCGTTCTCTTTGTTTGGCGGCGTGCCGGCG
GTCGGGGTCGTCGTCCGCGGTTGTTGGTGGTATAGCGTAGCTCGCCCGAT
ATTTTATTTCTGCCTGTGAGCTTAGCGAGTGGATCGCCCAACACGGCGTG
CCGCCCAATGATATTACGCGCAGCGGGCATAACAAAAAACGGGGTGGCGC
GCAAATAAACGAGAATATAGTGCGCGGGGATATATACCGCGACACAGTAC
ACCGAGCACGAACGTGAGGCAGTCGATAGCGAGAGGCGATCAACGATCGC
GCCGGATATAAGCAAAGTGTTAAATCACGAACACACCAGATAAAGATCGA
TACGTTACACGCACAATGAACCGTCTTCGCGTCGTGTATGTATTTTCGTT
GTTAGCTCTCGGCGTTAACACATACATTTCGATATCCCCCGATTAATGTT
AGGGACGGCCGCACGTGCGCCGCCCGCGAATATAGTACCGTATCTCGTGC
GACCGGATCGTAGTATAATTGACATGAGTAATCGTGCGAGTAGTCTGACT
ATCACCGACCTAACACTCGCTTATTTCATTATCTAATATCCGCCGCCGCA
TCTATCTTTTCTTTGGTGTATCCTCTATTATAATTATATATACTAACTAA
GTCGCACGAAAATAAACGAACACAAGGCTCAGTGCAGAGTCATCGAGAAG
TACAGAATATAAGTACGCGCGGCGATCGGAGCAATAGTNCGCGACGCGCA
CAGCACTCACGGTCGATGTATAGAATTAGTGTCGACGATATAATCAAGCA
CTCGACATCACGCGTTACAATCGAGTCCGACCACGTTGGTTTATCGCGCG
CTGATTGTACGCACAGACAATCCGATGAGACGCATCTNCTACGCCGTCCG
GGCGCGGACGTAGATATCGACACGAGTATATACGGACGTTCGCGCGTGCG
CACATCGTAGTCATNTCCACGCTAAACGTGAGAAATATCTAGATAACCGG
ACTCGTCGAATAATCTAGCCGAGGAGCGCNCACGCACCGTCGTATGACCA
TATAANTAAAATATACGTCTCGCGCCGCGGCGCATATACGCGCGACCACT
AAACCGACGCATCTACATTCTATACCGCAGATCACACGCATAATACGATC
CGATCTATAGACGACTATAACAATACGAGCAGGACCGGAGCAGTAATGAA
TATCAGCGCACACAACACAATTAACATATCGTGATCATCGTGACCAGATG
CGCTGTCGTCATAGACACGTATACGAATCANAGAACGCGTCCGGCGGCGC
TAGACGCGCACGGCGAAGCATGTCATATACTTACGATACGAAACGAACTA
TCTTATCAGCACGCGCGTACTATTACTTTCACACACGTATATCTCTTATA
TATANATTTACGCGCAGACATAATTATATCATTGACGTACTCTCACGCGG
CTATTAATATAGTATTAGTGCCCGACGGCGCGTCATCACGATCATCTATA
TTTCGCACGACAGCACTCCGCATATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_b22.b1 MSMg01no099_b22.b1 CHROMAT_FILE:
MSMg01no099_b22.b1 PHD_FILE: MSMg01no099_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:27 2005
         (650 letters)



>mm_chr1_143418738_143419787
          Length = 1050

 Score = 1185 bits (613), Expect = 0.0
 Identities = 637/645 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcataaaacactgcctcaaatcttagcgtttgaagaaaaaacataacattactttgc 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcataaaacactgtctcaaatcttagcgtttgaagaaaaaacataacattactttgc 265

                                                                       
Query: 66  caggttttatatgtcttcttgaactcccatgtctactcaattagactaattgttcttctc 125
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 266 caggttttatatgtcttcttgaactcccatgtctactcacttatactaattgttcttctc 325

                                                                       
Query: 126 cctgttccttaaataaacataacaaatctcaagaactgaaccacacagaactgtcctttc 185
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 326 cctgttccttaaataaacataacaaatctcaagaactgaaccacatagaactgtcctttc 385

                                                                       
Query: 186 caataaaataatctgcctaaaattgccttcatttttcacctgatattttagattttagat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 caataaaataatctgcctaaaattgccttcatttttcacctgatattttagattttagat 445

                                                                       
Query: 246 attgttttaaaaattgtcataaaagccattattcctaagcaattttaatttaattttatt 305
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 446 attgttttaaaaattgtcataaaagccattattcctaagcaattttaatttaatttaatt 505

                                                                       
Query: 306 ttatcctcatattattttatcttatttttgatgtacataatttatttctaaagcaaatca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttatcctcatattattttatcttatttttgatgtacataatttatttctaaagcaaatca 565

                                                                       
Query: 366 atttgtttttaaaatacacatgggcaccaatgtaaaggtttagtgcataaaaatacttgc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atttgtttttaaaatacacatgggcaccaatgtaaaggtttagtgcataaaaatacttgc 625

                                                                       
Query: 426 cttgctagccctttcccaagattttattggtcaattatgtttcatcttttgaatatcttc 485
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cttgctagccctttcccaaaattttattggtcaattatgtttcatcttttgaatatcttc 685

                                                                       
Query: 486 tattaagttcgttaagcccatttattgacctaggtgatttgaagtttggagttttaattc 545
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 686 tattaagttcgttaagcccatttattgacctaggtgatttgaagttttgagttttaattc 745

                                                                       
Query: 546 ttacagtatgttaaatatatatatgtatatgtattgcaagtcttttctgacattctggaa 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttacagtatgttaaatatatatatgtatatgtattgcaagtcttttctgacattctggaa 805

                                                        
Query: 606 ctttctaatgccagaatcagtttattttccacagcttttctattc 650
           |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 806 ctttctaatgccagaatcagtttatttttcacagcttttctattc 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |