CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGATCCGCGG
AATTCCCAACTGTGACCTCACAACTGGCCAAGAAGCACTTAAAGAAATGT
TCAAAGTTCTTAGTAGTCAGAGAAATGCAAATCAAAATGATCCTGAGATT
CCACCTCACTCCAATCAAAATGGCTAAAATCAGTCACTTGGGTGACAGCA
GATGCTTCCAAGTATGTGGAGAAAGAGGAACACTCGTCCATTGCTGGTGA
GATTGCATGCTGGTAAAACTACTTTGGAAAACAATCTGGCAGTTCCTCAG
AAAATTGGAAGTAGTTCTACCTGATTATCCCAACATTTGCAGTCCCAAAG
CCTACCCCCAGTGACATACTTTCTACCACAAGGCCACACCTACTCTAACA
AGGCCACATATCCTAAAGTATTCTCTAAACATTCAAATATAGGAGGCCAT
GGGAACAATCTTATTCAAACCCTCCCAGAAATCTTGTCCTCATAGAAGCT
AAAATTAACTACACAGAATATTCACAAGATATGTTTTTCAGTGTTTAGTA
GTGGATGGTGGTGGATGGTGGTGGCCCTGACTCCCCCATTTCCCCTCCCC
CATATTTTGTTTTCCATTATCTCCTGTTCAACTCCTTACCTCTTTTCTCC
CCTCGTCTCTATCCCCCCTTTTTTCTTCCCCCCGCGTCTCTTTTCACCCC
CTTTCTTTCCCCTCCTCCCTCTTTTTCTTTC

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTCGA
ACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGA
GCGCCACCATGCCAGGACTGAAACACATTTTCATTTCATAATAAGCATCA
TGTTTCAAATTATATGAAATGTTTACAATGTTCTCGATAATGTTGAACTA
CGATCATGAAACCTGTTCACTCTACTCACATTTCAAAAGAGGAAGGAGAA
TTAGTAAGGACAGAGTACTCCACTTCTCTGGAAGCTGTCTAAACCCTAGA
GCTTTGTTTAAATTCAACTTGATGTGAGTTCAAACAAGTCTTGAGTTGTG
CTGTTGACCTTTTGGTTTCTCAGTAATCTGCATGTGGTGGCTCATCCTTA
ATGTTCTATGGTGATCCCACAATTAAAGTCAGGTAATATAAACTAGAAAC
TAGAAAGTTGCCCCAACTACGGTGAAATAATTTAAATGACAGAACAAAAT
CATTTTAAAAGGATGAATAACTTCATCTGATGTCTTAAAAGATTTTTGCC
AAAACAGGCCTATGATATCTTTGAATTAACTTACTTTGCTTAAAAGTAAA
TGGCAGACGCAAAAGAGAGCTTGCCACTTTCTCCTGCTGCTGAGTCAGCT
CTTTAAGATGTCN

Query= MSMg01no099_c04.g1 MSMg01no099_c04.g1 CHROMAT_FILE:
MSMg01no099_c04.g1 PHD_FILE: MSMg01no099_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:28 2005
         (599 letters)



>mm_chr1_47506840_47507836
          Length = 997

 Score = 1054 bits (545), Expect = 0.0
 Identities = 590/615 (95%), Gaps = 19/615 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaggctggcctcgaactcagaaattcgcctgcctctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 actctgtagaccaggctggcctcgaactcagaaattcgcctgcctctgcctcccaagtgc 624

                                                                       
Query: 61  tgggattaaaggcgagcgccaccatgccaggactgaaacacattttcatttcataataag 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 623 tgggattaaaggcgagcgccaccatgccaggactgaaacacatttttatttcataataag 564

                                                                       
Query: 121 catcatgtttcaaattatatgaaatgtttacaatgttctcgataatgttgaactacgatc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caccatgtttcaaattatatgaaatgtttacaatgttctcgataatgttgaactacgatc 504

                                                                       
Query: 181 atgaaacctgttcactctactcacatttcaaaagaggaaggagaattagtaaggacagag 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atgaaacctgttcagtctactcacatttcaaaagaggaaggagaattagtaaggacagag 444

                                                                       
Query: 241 tactccacttctctggaagctgtctaaaccctagagctttgtttaaattcaacttgatgt 300
           ||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 443 tactcaacttctctggaagct--ctaaaccctagagctttgtttaaattcaacttgatgt 386

                                                                       
Query: 301 gagttcaaacaa-gtcttgagttgtgctgttgaccttttggtttctcagtaatctgcatg 359
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagttcaaa-aatgtcttgagttgtgctgttgaccttttggtttctcagtaatctgcatg 327

                                                                       
Query: 360 tggtggctcatccttaa---------------tgttctatggtgatcccacaattaaagt 404
           |||||||||||||||||               ||||||||||||||||||||||||||||
Sbjct: 326 tggtggctcatccttaactagctgcgccttaatgttctatggtgatcccacaattaaagt 267

                                                                       
Query: 405 caggtaatataaactagaaactagaaagttgccccaactacggtgaaataatttaaatga 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caggtaatataaactagaaactagaaagttgccccaactacggtgaaataatttaaatga 207

                                                                       
Query: 465 cagaacaaaatcattttaaaaggatgaataacttcatctgatgtcttaaaagatttttgc 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cagaacaaaatcattttaaaaggatgaataacttcatctgatgtcttaaaagatttttgc 147

                                                                       
Query: 525 caaaacaggcctatgatatctttgaattaacttactttgcttaaaagtaaatggcagacg 584
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 146 caaaacaggcctatgatatctgtgaattaacttactttgcttaaaagtaaatggcagaag 87

                          
Query: 585 caaaagagagcttgc 599
           |||||||||||||||
Sbjct: 86  caaaagagagcttgc 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 997
Length adjustment: 10
Effective length of query: 589
Effective length of database: 987
Effective search space:   581343
Effective search space used:   581343
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)