BAC Information

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BAC

Clone NameMSMg01-099C13
Chromosome1 (Build37)
Map Location 148,006,168 - 148,006,685
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625057, LOC383570
Downstream geneLOC383571, B830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099C13.T7 (MSMg01no099_c13.b1)MSMg01-099C13.TJ (MSMg01no099_c13.g1)
ACCAG315160AG315161
length697701
length of high quality
(start - end)
524 (44 - 567)482 (76 - 557)
definitionCHROMAT_FILE: MSMg01no099_c13.b1 PHD_FILE: MSMg01no099_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:30 2005CHROMAT_FILE: MSMg01no099_c13.g1 PHD_FILE: MSMg01no099_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGC
GGAATTCTCTAACTGATCCCCCAAGGACGGTGTGCAATATGGCACACATT
TTCATTGTACATATATGAAGCCCTATTGAATTAACATAGCTAATTCATGA
AATAAGCATGATATCATATTAAACCCCTCTATGCTATGCAAGGATTATAC
ATTAAGAGAATTTAACATGTAAAATATATACCTAAAATCACAATTCTAAC
TTCTTCCTGCTATAGTGAATTTGATCCCTCTGCATCTCCTTTTTGGTTAA
TAAAGTTAGGATCACACCAGATGACTGATCCACAGGCTTAAAGCATTTTT
GTTTCTGTATCCATTGATGCTTTACCTGCAACCATTCAGCAATAGTGTTA
GGTCACTATCTCTGTTTTCAATTTTACTTTTCAATTTCATCATCTCTAAC
TGTTTCTTAGGCCAAACAGTGATAGGAACCCTATCCTTAACTTCAACTTC
ACTCAGGTTTGAGATTTGATAGACTGCTCTTACCTTCCTTCAAAGTTTCT
GTCTTTTCCACAAATGGTTAAATAGGCCTACAGAAGAACTATTGCTCTGA
TTAGTTAACAGAAGCTATAACTTGCTCATTTATCCCTTATATATGACTTA
AATTTGAGAGAGACTTGTCCTTTATTATACATACCTAAATATGTTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGATGAATACCGAATGGCAG
AAAAGCACCTGAAAACATGTTCAACATCCTTAATCATCAGGGAAATACAA
ATCAAAACAACCCTGAGATTTCACTTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGACGAGGATATGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGAACATAGTACTACTGGAGGATCC
AGCAATACCCCTTCTGGGCATTTATCCAGAAGATGTCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAAGAATGGATACAGAATAT
GTGGTACATTTACACAATGGAGTATTACTCAGCTATTACATGAATGAATT
TGTGAAATTCGTAGTCAATGGATGGACCTGTAGGGCATCATACTGAGTGA
GGTAACCTAATCTCAAAGGAACTCACATAATATGTACCTCCTGATAAGTG
GATATTATCCCAGAAACTCAGGATACCCAAGATACACCACCCAGTTTGCT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_c13.b1 MSMg01no099_c13.b1 CHROMAT_FILE:
MSMg01no099_c13.b1 PHD_FILE: MSMg01no099_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:30 2005
         (524 letters)



>mm_chr1_148005961_148006885
          Length = 925

 Score =  922 bits (477), Expect = 0.0
 Identities = 508/521 (97%), Gaps = 7/521 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   ggaattctctaactga---tcccccaaggacggtgtgcaatatggcacacattttcattg 64
           ||||||||||||||||   |   |||||||||||||||||||||||||||||||||||||
Sbjct: 725 ggaattctctaactgaggtt---ccaaggacggtgtgcaatatggcacacattttcattg 669

                                                                       
Query: 65  tacatatatgaagccctattgaattaacatagctaattcatgaaataagcatgatatcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tacatatatgaagccctattgaattaacatagctaattcatgaaataagcatgatatcat 609

                                                                       
Query: 125 attaaacccctctatgctatgcaaggattatacattaagagaatttaacatgtaaaatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 608 attaaacccctctatgctatgcaaggattatacattaagagaatttatcatgtaaaatat 549

                                                                       
Query: 185 atacctaaaatcacaattctaacttcttcctgctatagtgaatttgatccctctgcatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atacctaaaatcacaattctaacttcttcctgctatagtgaatttgatccctctgcatct 489

                                                                       
Query: 245 cctttttggttaataaagttaggatcacaccagatgactgatccacaggcttaaagcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cctttttggttaataaagttaggatcacaccagatgactgatccacaggcttaaagcatt 429

                                                                       
Query: 305 tttgtttctgtatccattgatgctttacctgcaaccattcagcaatagtgttaggtcact 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 428 tttgtttctgtatccgttgatgctttacctgcaaccattcagcaatagtattaagtcact 369

                                                                       
Query: 365 atctctgttttcaattttacttttcaatttcatcatctctaactgtttcttaggccaaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atctctgttttcaattttacttttcaatttcatcatctctaactgtttcttaggccaaac 309

                                                                       
Query: 425 agtgataggaaccctatccttaacttcaacttcactcaggtttgagatttgatagactgc 484
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 308 agtgataggaaccctatccttaacttcatcttcactcaggtttgagatttgatagactgc 249

                                                    
Query: 485 tcttaccttccttcaaa-gtttctgtcttttccacaaatgg 524
           ||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 248 tctcaccttccttcaaaagtttctgtcttttccacaaatgg 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space:   470310
Effective search space used:   470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)