CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTAAGATAACGCTTAATATTCTGAAATTCTCTGGATCTGTGTAA
ATGTACAATATTTTAACACAATAGTAGGAAGATTTTTTTAGAATGATTTT
ATTTATTTTATGTATATGAATATACTGCCTGTCTTCAGAAACACCAGAAG
AGGGCATCGGATCCCATTACAGATATTTTAGAGCCACCATGTGGTTGCTG
GGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCCTAACCGCTG
AGCCATCTCTCCAGTCCCAGGAAGAATTTTAAAACTACATTTGCCAGTGT
GCAAGCGTGCCATGACACGTGGAGTCACAGAACAACATGCAGGAATTGGT
TATCTCTCTCCACCACGTGGGTTCTTGGGATCAAACTCAGATTGGCAGGC
TCTGCGGCAAGTGCCTTTACCCAACGAACCATCTTGCCACCAAGGTCTTG
TTTTTAATGGGTAAGTGTTTTAAAATAGTCATAAAAGTTGCCAGGACTTA
TCTAGGTCATCAAAATGAAGGATACTTGACCTTGCTGGTCATTGAGGCCA
GGATCTGGATATTAGATTTTTTCTGCCTGTAAGCTTCACTGTTATCAACA
GTCATCTTTCATTGTTCTGAAGATGACAGTGTAGTATAATAGGAAGGGGA
AAATATAGCCAGTCCCTGTCTTTACTACCTTTTC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAAGCATACTGCATTTCTTCGAGC
TCCCTCTTATTCGCAGCTTATGACACACATGTCTTTATTCCCTTACAAAA
GGGCACGCTTGCCTGATGACTATGAGCTGCACTTACTCTGCTACTTATCA
GAAATGCATGCCGTTCTGGTCGCCATATCTGACTAATATCATTCAGGATG
TCGTAACCACGGTGGAAAGAAAATCCACGGTGTATAGCGAAGCATCTTTT
GAATGCATGCCCTCGGATGTTCCTGTTGAATCTATTAGTACGAGCCGATT
CTACTTTCTGAGCATATACTCTTGAGTTCTTCGTAGAAGCTGCATGAATT
TGCATCCCTAATATCTATGTGCGACCTGCTCCTAATTGCCACTCCGACCC
CCATAAAATCTATTCCCTTAACACATATGATTAGAGATTCCCTGACGGCT
ACACCAGAGACAAATTTCCTTGACTAGATTATTGAGGATTTCTGATTCGC
TTCTCCGAACAAATGTATACCCCATCCTTTGATTTATCTACATGACGCGA
CTGGAATCCGGTGTACGCAGGGACAAAGACTACTGTTTAGCCCGGCCACA
ACTTTGCTACTCACCCTGCGATTCCACATAGTTTTCTACCAACATGAATT
ATCACCTGCCTAACGGGCTTTGTAAGGCCAACCCTCACCAATCACAAACC
TCTGCAAACCCCGG

Query= MSMg01no099_d05.b1 MSMg01no099_d05.b1 CHROMAT_FILE:
MSMg01no099_d05.b1 PHD_FILE: MSMg01no099_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:34 2005
         (579 letters)



>mm_chr1_153605034_153606012
          Length = 979

 Score = 1069 bits (553), Expect = 0.0
 Identities = 571/577 (98%), Gaps = 2/577 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctaagataacgcttaatattctgaaattctctggatctgtgtaaatgtacaa 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctaagataatgcttaatattctgaaattctctggatctgtgtaaatgtacaa 263

                                                                       
Query: 64  tattttaacacaatagtaggaagatttttttagaatgattttatttattttatgtatatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 tattttaacacaatagtaggaagatttttttagaatgattttatttattttatatatatg 323

                                                                       
Query: 124 aatatactgcctgtcttcagaaacaccagaagagggcatcggatcccattacagatattt 183
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 aatatactgcctgtcttcagaaacaccagaagagggcatcagatcccattacagatattt 383

                                                                       
Query: 184 tagagccaccatgtggttgctgggaattgaactcaggacctctggaagagcagtcagtgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagagccaccatgtggttgctgggaattgaactcaggacctctggaagagcagtcagtgc 443

                                                                       
Query: 244 tcctaaccgctgagccatctctccagtcccaggaagaattttaaaactacatttgccagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcctaaccgctgagccatctctccagtcccaggaagaattttaaaactacatttgccagt 503

                                                                       
Query: 304 gtgcaagcgtgccatgacacgtggagtcacagaacaacatgcaggaattggttatctctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgcaagcgtgccatgacacgtggagtcacagaacaacatgcaggaattggttatctctc 563

                                                                       
Query: 364 tccaccacgtgggttcttgggatcaaactcagattggcaggctctgcggcaagtgccttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tccaccacgtgggttcttgggatcaaactcagattggcaggctctgcggcaagtgccttt 623

                                                                       
Query: 424 acccaacgaaccatcttgccaccaaggtcttgtttttaatgggtaagtgttttaaaatag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acccaacgaaccatcttgccaccaaggtcttgtttttaatgggtaagtgttttaaaatag 683

                                                                       
Query: 484 tcataaaagttgccaggacttatctaggtcatcaaaatgaaggatacttgaccttgctgg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcataaaagttgccaggacttatctaggtcatcaaaatgaaggatacttgaccttgctgg 743

                                                
Query: 544 tcattg-aggccaggatctggatattagattttttct 579
           |||||| || |||||||||||||||||||| ||||||
Sbjct: 744 tcattgcag-ccaggatctggatattagatcttttct 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)