BAC Information

Click to search

BAC

Clone NameMSMg01-099I01
Chromosome1 (Build37)
Map Location 53,287,279 - 53,287,807
singlet/doubletsinglet
Overlap genePms1
Upstream geneGls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik
Downstream geneLOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099I01.T7 (MSMg01no099_i01.b1)MSMg01-099I01.TJ (MSMg01no099_i01.g1)
ACCAG315424AG315425
length696697
length of high quality
(start - end)
75 (37 - 111)528 (77 - 604)
definitionCHROMAT_FILE: MSMg01no099_i01.b1 PHD_FILE: MSMg01no099_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:01 2005CHROMAT_FILE: MSMg01no099_i01.g1 PHD_FILE: MSMg01no099_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATG
TGTACCCGTGAATAGTTTTGTTTTTTTAAACTATCATATGATGCTTTCCT
GGGACTGCTGTTGACACCACAAAGCATATATACAGGGGTGAAAAGGCATC
ATTGCAGAAAAACATCATAAAATTTATTAGTTCTGGCAATGGTTGTTGCT
TCCTTCTGTTATAAGGATTGGCAAATGTTGAGACCCTACTGTGAACTGGG
GAAGCCTTACAAGCCAAGACAAGGCATGAGATATTTCTACAGCAGGTTCT
GCTTTGCCTGTTGTTTTCTTTTTTGAGACAAGTCTCACTGAGTGGCACTG
GCTGGCCTGGAACATCCGCCTACCTCTGCAGTGCTGGCATTAAAGGTGTG
TACCATAACGCATAGCTCTTTATCGTGTTACTTACTGGTCTTATACAATA
GAAAAGAATTTAACTATTAAATTTTGACTTTTATACCTGACACATGTAAA
ACACCGGTGACATTTTTCCCTTACAACGGCAGAAAATGACTTAAATCCTT
TGCTACTTACCTCCTATGAACCTGAGCTTGGGAGTGCAGTGCTTTCCCCA
GCCAATTCCTAGTTTCATTCATCTCAGCCCTCTCCTGTGTTTTCATTCCC
TGTTTTTTTATTCCCAGGCCCATTTTCATGACCTCATTATAATTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATAGAAGGAGAAAATGGATTCC
TCCAAGTTGTCTCTGACTTATACACAAACACACAATAAATAAACGTTAAA
ACAAAAAAGGAAATGATCAGTGATCATGAATCTAAAGTGGTACTGCATAG
CTGGGATATATGTTCTATCTTTTGCACACTGAGATGAAAAACACATGGTT
TTAACATACCAGGTTAATCAAACATGTACATTTAAGCGGGAAAGCAGTAG
AAGTCAAATAGGGACCAAGAGAAGGTGATAACAGTGTACCGTGTAGTTTA
CCAAAAATAAGGATAATTAAAAAAAAAAAGGTGGGGGAAGAAAAAAAAGA
ATGGTCTGAGCTAGGCCTGCACATGCCTAGTACCCCAACCTTGAAGAAGT
GGAGACAGGGGCACAGGAAATCCGAGTCCCAGTCTGGGTTATAAGATGAG
AACTTGAATCTGCAAGAATGTTCAAGAAGTAGCAATGAAACATAATTATT
TGAAGAATAGATGAAATAAATCAGTCATCACTAGAAAGAGCTGTTGGGGA
CAGAGAGTCCTCAAAGAGAGTCAGATTTCAGCTACAGCAAATAGAGACAG
GCTAAGGGAATAGCAATTTTACTTTCTGTTGGCCATTAAAGAAGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_i01.g1 MSMg01no099_i01.g1 CHROMAT_FILE:
MSMg01no099_i01.g1 PHD_FILE: MSMg01no099_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:01 2005
         (528 letters)



>mm_chr1_53287079_53288007
          Length = 929

 Score =  907 bits (469), Expect = 0.0
 Identities = 514/529 (97%), Gaps = 1/529 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatagaaggagaaaatggattcctccaagttgtctctgacttatacacaaacacacaat 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 acatagaaggagaaaatggattcctcaaagttgtctctgacttatacacaaacacacaat 260

                                                                       
Query: 61  aaataaacgttaaaacaaaaaaggaaatgatcagtgatcatgaatctaaagtggtactgc 120
           |||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct: 261 aaataaacattaaaacaaaaaagtaaaagatcagtgattatgaatctaaagtggtactgc 320

                                                                       
Query: 121 atagctgggatatatgttctatcttttgcacactgagatgaaaaacacatggttttaaca 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagctgggatacatgttctatcttttgcacactgagatgaaaaacacatggttttaaca 380

                                                                       
Query: 181 taccaggttaatcaaacatgtacatttaagcgggaaagcagtagaagtcaaatagggacc 240
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 taccgggttaatcaaacatgtacatttaagtgggaaagcagtagaagtcaaatagggacc 440

                                                                       
Query: 241 aagagaaggtgataacagtgtaccgtgtagtttaccaaaaataaggataattaaaaaaaa 300
           |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 441 aagagaaggtgataacagtgtaccgtgtagtttaccgaaaataagggtaattaaaaaaaa 500

                                                                       
Query: 301 aaa-ggtgggggaagaaaaaaaagaatggtctgagctaggcctgcacatgcctagtaccc 359
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaggtgggggaagaaaaaaaagaatggtctgagctaggcctgcacatgcctagtaccc 560

                                                                       
Query: 360 caaccttgaagaagtggagacaggggcacaggaaatccgagtcccagtctgggttataag 419
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 caaccctgaagaagtggagacaggggcacaggaaatccaagtcccagtctgggttataag 620

                                                                       
Query: 420 atgagaacttgaatctgcaagaatgttcaagaagtagcaatgaaacataattatttgaag 479
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 atgagaacttgaatctgcaagaatgtttaagaagtagcaatgaaacataattatttgaag 680

                                                            
Query: 480 aatagatgaaataaatcagtcatcactagaaagagctgttggggacaga 528
           |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 aatagatgaaataaatcagtcatcaccagaaagagctgttggggacaga 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space:   476042
Effective search space used:   476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)