BAC Information

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BAC

Clone NameMSMg01-099J13
Chromosome1 (Build37)
Map Location 181,800,668 - 181,800,836
singlet/doubletsinglet
Overlap genenone
Upstream geneKif26b, Smyd3, LOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914
Downstream geneLOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099J13.T7 (MSMg01no099_j13.b1)MSMg01-099J13.TJ (MSMg01no099_j13.g1)
ACCAG315496AG315497
length732680
length of high quality
(start - end)
276 (48 - 323)164 (56 - 219)
definitionCHROMAT_FILE: MSMg01no099_j13.b1 PHD_FILE: MSMg01no099_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:09 2005CHROMAT_FILE: MSMg01no099_j13.g1 PHD_FILE: MSMg01no099_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCACTCTGTACCCCAGGTTGGCCTCGAACTCAGAAATCTGCCTGCC
TCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACTTCCCAGCT
TTTCATGACTTTTTTTTTTCTTTTTTTTTCATATTTTTTTATTACGTATT
TTCCTCAATTACATTTCCAATACTATCCCAAAAGTCCCCCCATACCCTCC
CCCCCACTCCCCTACCCACTCATTCCCACTTTTTACCCCTGGCGCTCCCC
TGTACTGGGGCATAAGATGGCTCATCGTTTAATAGCACTGACTGCTCTTC
TGAAGCGCCCTGAGTTCACATCCCAGCTACCCCGTGGTGGTTCACAACCA
TCCATAACGAGATTTTCATGACTTTTTAATGAATAAAATATTACCCACTG
AGACCTGACCGGCGAGAGACTCTCACGACTCATTGGGGGTGACCTTAGTC
ATTATGCCCAACATTACCGCATAGGCAATTGTCACTACCCCACCATCTTT
TACATATATTGAGTCTTACGTGCACGTTCCCGCCCTCACTAATTCCCGCC
CAAAACCCCCGTATTCATTATTCCGCCCCTGTCCCTACCTTAATTTGTCC
CGCACTCTTTTTCGTCTTAACAACTACTCATTGTTTCTGGCTACTCCCTT
TTGTTCTCTTCTCCCCACGTTTTTTCATTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTTTCTTCCTTTGATGAATGTGCAGTTTAGAGAAGCCCAAAGCA
GGGCCCTCCCTGTAAGTACAGGGAGTGGGAAAGGCGTGGAAAATGTAAAC
ATGCATCTTTTTATTAACCTCCTTGTTTGGGAACACATCTTTTGCTTGTA
AATGCTCAAACATTGAGGCAGAGTTCAGAGAGCAGAAGATGAAGTTCAAG
GACCAAGTTGATATTTCTGTGGCCCTTGCTGGACTCTTAGGTGCTACATA
TACATGTAAGCCTAGGGTGTGCTGCTGGCAGCTGGTGGGCCAGTTATTTG
CCCGCGCAATCTTACTTGTATATCTGGAAGACAAGATTACTGCATGGTAA
AAAGAATCTCTTTGTTTTGGACTGGATCCGGATCCAGTCACGTCAGGTTG
AGGTATAATTTGAAAACTTCCGGACATTGGCTTTATGCAATCTCTATATT
ATAGTATCTTTCTAAACAATGAGCACCCTTGGTAATGTTATTCTATGCGC
AATTTTCATGGTTGTCTCGGGCCCCTCTGAGAATTGTTTTACCATCCCCC
TAACACTCTCCTCCCCCTCCCCTTTTTCCCTATTCTTCCCTCCTACAAAT
TCCCGAATGTTTCTCCCCCCTTTTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_j13.g1 MSMg01no099_j13.g1 CHROMAT_FILE:
MSMg01no099_j13.g1 PHD_FILE: MSMg01no099_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:09 2005
         (164 letters)



>mm_chr1_181800468_181801036
          Length = 569

 Score =  275 bits (142), Expect = 1e-78
 Identities = 161/170 (94%), Gaps = 7/170 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttcttcctttgatgaatgtgcagtttagagaagcc-----caaagcagggccctccc 55
           ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||
Sbjct: 201 tttttcttcctttgatgaatgtgcagtttagagaagccaagcccaaagcagggccctccc 260

                                                                       
Query: 56  tgtaagtacagggagtgggaaaggcgtggaaaatgtaaacatgcatctttttattaacct 115
           |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tgtaagtacagggaatgggaaaggcgtggaaaatgtaaacatggatctttttattaacct 320

                                                             
Query: 116 ccttgtttgggaacacatcttttgcttgtaaatgct-caaacattgaggc 164
           |||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 321 ccttgtttgggaacacatcttttgcttgtaaatg-tacaaacattgaggc 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 569
Length adjustment: 8
Effective length of query: 156
Effective length of database: 561
Effective search space:    87516
Effective search space used:    87516
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)