BAC Information

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BAC

Clone NameMSMg01-099K03
Chromosome1 (Build37)
Map Location 57,454,139 - 57,454,624
singlet/doubletsinglet
Overlap gene1110034B05Rik
Upstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik
Downstream gene9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099K03.T7 (MSMg01no099_k03.b1)MSMg01-099K03.TJ (MSMg01no099_k03.g1)
ACCAG315524AG315525
length717711
length of high quality
(start - end)
453 (46 - 498)468 (76 - 543)
definitionCHROMAT_FILE: MSMg01no099_k03.b1 PHD_FILE: MSMg01no099_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:12 2005CHROMAT_FILE: MSMg01no099_k03.g1 PHD_FILE: MSMg01no099_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCTGTACCCCAGGCTGGCCTTGAACGCAGAAATCTGCCTGCCT
CTACCTCCCAAGTGCTGGGATTAAAGGCGAAGCACAACATTGAAAAGGAG
TGGCAATTGTAGACATCCCTCTCATTCCTGACTTCAGTGGGGTTATTTCG
AATTTTCTTCACTTAAGGTGATGTTGGCTGCAGATTTCTCAAATGTAGCT
TTTATTATGTTGAGATATGATCCCTCTCACCCTACATTCTGTAGGACTTT
TACCATGAACGCATGTTATATTTTGTCACTTTTTCTGCATCTATTGAGAT
GATCATGTGATTTTTGTCTTCAAGTCCCTTTATGTGGTTTATTACATTTA
TTGACTTGCACATGTTGAACTACCCCCGAATTTCAGGGATAAAGCAAACT
TAGTCATGGCAGATAATCATTTTAATGTGTGTCTGTATTCTATTTGCAAG
CACTACTATGAGCAATTTTGACTATGTTCATCAGGACTATTGGTCTGTAG
TTTTCTTTTTTGTTTGTTCGCCTTTGTCAATTTGCATTGCTTTGTTTGCT
TGTCGCGGTTTGCCTTCCCTCCATTTCCTTATCCCTTCTCCCTTTTTCCC
CTCTTCTCTTTCCCGTTCTTTTTTTTCTCTATCCTTTTTCTTCTCCTCCC
CTCTCTTCTTTTTTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTCTTGCTGTTGATATAGTACT
ATCTTCATGATTGGGAAATGTTTGTGCAATTTTTAAAAAAATTAATTAAT
AATAGGGTTAGAAGCCAGAGTCTGGTGATAGCTAGGAAGCTCTCTGCTGA
TAATCTACATCTGGAAAGTGCTAGGACAACTGGAGCAAAAGTAGCACTCT
AACTTGAAGAGTATGGTGTACTGGAAATAAATGTTGTTCCTTAAATGTCT
AACGATTTTCTCTAGAAGCCTTAATATGGCAGGTAGAGTAGGAGCGAGGG
GCGGAAATGTCTTCCCTAGTAAGCTCGTTACTCATGTGAGACTAGTAGCT
TGTCTCATTTACAAGATTTGTTTGCCCATTACACTTGAAGGCAGGGGCCA
GCCAGAGCCCCAAAGTCTGTGTATTTTAATTTTACACTTACAGCTTACAT
GGATGAGTTGCTTGCATGTATGTATGTGCACTGCATTAAGTGCACTGTGT
GTGTGTGTGTGTGCGCGTGCGTGTGTGTGTGTGTGCGCGCGCCTTCACCA
ATATATATTCCCGCTTATTTAAACCCCTCTTCTTCCCTTTTTTTTCTCCT
TTCTTTTTCCCTTTTTCTTCTTCTCCCCCCCCCCTCACCCCTTCCCTTCT
CTTCTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_k03.g1 MSMg01no099_k03.g1 CHROMAT_FILE:
MSMg01no099_k03.g1 PHD_FILE: MSMg01no099_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:12 2005
         (468 letters)



>mm_chr1_57453805_57454672
          Length = 868

 Score =  764 bits (395), Expect = 0.0
 Identities = 455/487 (93%), Gaps = 20/487 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtcttgctgttgatatagtactatcttcatgattgggaaatgtttgtgcaattttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 820 tttgtcttgctgttgatatagtactatcttcatgattgggaaatgtttgtgcaatttttt 761

                                                                       
Query: 61  aaaaaattaattaataatagggttagaagccagagtctggtgatagctaggaagctctct 120
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aaaaaattaattaat-ttagggttagaagccagagtctggtgatagctaggaagctctct 702

                                                                       
Query: 121 gctgataatctaca-------------------tctggaaagtgctaggacaactggagc 161
           ||||||||||||||                   |||||||||||||||||||||||||||
Sbjct: 701 gctgataatctacatctggaaagtgcttttagttctggaaagtgctaggacaactggagc 642

                                                                       
Query: 162 aaaagtagcactctaacttgaagagtatggtgtactggaaataaatgttgttccttaaat 221
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 641 aaaagtagcactctaacttgaagagtatggtgtactggaaataagtgttgttccttaaat 582

                                                                       
Query: 222 gtctaacgattttctctagaagccttaatatggcaggtagagtaggagcgaggggcggaa 281
           |||| || |||||||||||||||| ||| ||||| ||||||| |||||||||||||||||
Sbjct: 581 gtctgaccattttctctagaagccataacatggcgggtagagcaggagcgaggggcggaa 522

                                                                       
Query: 282 atgtcttccctagtaagctcgttactcatgtgagactagtagcttgtctcatttacaaga 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atgtcttccctagtaagctcgttactcatgtgagactagtagcttgtctcatttacaaga 462

                                                                       
Query: 342 tttgtttgcccattacacttgaaggcaggggccagccagagccccaaagtctgtgtattt 401
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 461 tttgtttgcccattacacttgaaggcaggggccagtcagagccccaaagtctgtgtattt 402

                                                                       
Query: 402 taattttacacttacagcttacatggatgagttgcttgcatgtatgtatgtgcactgcat 461
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 taattttacacttagagtttacatggatgagttgcttgcatgtatgtatgtgcactgcat 342

                  
Query: 462 taagtgc 468
           |||||||
Sbjct: 341 taagtgc 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)