Query= MSMg01no100_b07.b1 MSMg01no100_b07.b1 CHROMAT_FILE:
MSMg01no100_b07.b1 PHD_FILE: MSMg01no100_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:50 2005
(527 letters)
>mm_chr1_23118670_23119602
Length = 933
Score = 951 bits (492), Expect = 0.0
Identities = 519/530 (97%), Gaps = 6/530 (1%)
Strand = Plus / Plus
Query: 4 ggaattcttttcatgcattcatagcagactaagaaaatgcaagtcatctctcctaatgag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttcatgcattcatagcagactaagaaaatgcaagtcatctctcctaatgag 263
Query: 64 acatttcctttctcatggttgcttac-caaaggcatgaatgcatagaatgcctcattatc 122
|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct: 264 acatttcctttctcatggttgcttacacaaaggcacgaatgcatagaatgccccattatc 323
Query: 123 taaataactagggagggggagaatgggaacagtttgaagaaaatatatggcaatgacctc 182
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 324 taaataactagggagggggagaatgggaaccgtttgaagaaaatatatggcaatgacctc 383
Query: 183 ttttacagcattgctaaaaaggacaaatgatgccaggctggctattcctgtggatgacct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttacagcattgctaaaaaggacaaatgatgccaggctggctattcctgtggatgacct 443
Query: 243 cagcactaactcagctcaagacgatgttcacacttgaggaaaatgaagtacagagttgtg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagcactaactcagctcaagacgatgttcacacttgaggaaaatgaagtacagagttgtg 503
Query: 303 attaagcccatggcaagaggaaacacctctgctctgaaatggaatttaggtcaactgatg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attaagcccatggcaagaggaaacacctctgctctgaaatggaatttaggtcaactgatg 563
Query: 363 ttggaag---cagggggggg--ggggtcacactgaaacactgtcagagctttctaacttt 417
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttggaaggagcaggggggggcgggggtcacactgaaacactgtcagagctttctaacttt 623
Query: 418 aggcgtggtaactttcaggtctcaaagtttagctgttccttgctgtcaagaatcctatgg 477
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 624 aggcgtggtaactttcaggtctcaaagtttagctgctccttgctgtcaagaatcctatgg 683
Query: 478 aagaggtcaacggaaacagatgtggaatccagcagtgttcagcattgctc 527
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 aagaggtcaacggaaacagatgtggaatccagcagtgttcagcactgctc 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 933
Length adjustment: 10
Effective length of query: 517
Effective length of database: 923
Effective search space: 477191
Effective search space used: 477191
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_b07.g1 MSMg01no100_b07.g1 CHROMAT_FILE:
MSMg01no100_b07.g1 PHD_FILE: MSMg01no100_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:50 2005
(561 letters)
>mm_chr1_23179506_23180466
Length = 961
Score = 1054 bits (545), Expect = 0.0
Identities = 557/561 (99%), Gaps = 1/561 (0%)
Strand = Plus / Minus
Query: 2 aaac-aaccaatatttatagtatccacaagacatgggcgacctgtaggcaactctccttt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 aaacaaaccaatatttatagtatccacaagacatgggcgacctgtaggcaactctccttt 840
Query: 61 cctttataccaaggtacaagaacgcgctctccagccctggctaaaaaaataaataaataa 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 839 cctttataccaaggtacaagaatgcgctctccagccctggctaaaaaaataaataaataa 780
Query: 121 gtcaaaaataaaaaataagactcacacattcttgagttttctgggccttcaagacagaaa 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 779 gtcaaaaataaaaaataagactcacacattcttgagttttctgggctttcaagacagaaa 720
Query: 181 tcacaaaagtcactggcaatgttttaattagctgaagtaagtgctggggaagtgacagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tcacaaaagtcactggcaatgttttaattagctgaagtaagtgctggggaagtgacagaa 660
Query: 241 actgggcggttgactgaagtcatttgcttttagtgctattgctaccctcaatcgtccttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 actgggcggttgactgaagtcatttgcttttagtgctattgctaccctcaatcgtccttt 600
Query: 301 gggctttttttcagcagtgtgtgacctcactgtggactttccccacctctttgtccaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gggctttttttcagcagtgtgtgacctcactgtggactttccccacctctttgtccaaac 540
Query: 361 acctcgttgatgctatagacaggccgatttgtatggtgagtttgtcagtaatacaatatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 acctcgttgatgctatagacaggccgatttgtatggtgagtttgtcagtaatacaatatt 480
Query: 421 cttatataagtggcttaagcttgctatttgtttttcattttaactgcccacaaagtatga 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 479 cttatataagtggcttaagcttgctatttgtttttcattttaactgcctacaaagtatga 420
Query: 481 catgtaattttgtgctgaaactatagagacttcacattctgacagttagaaagatgttag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 catgtaattttgtgctgaaactatagagacttcacattctgacagttagaaagatgttag 360
Query: 541 tctaaactatgttttctctct 561
|||||||||||||||||||||
Sbjct: 359 tctaaactatgttttctctct 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
