BAC Information

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BAC

Clone NameMSMg01-100B23
Chromosome1 (Build37)
Map Location 31,430,345 - 31,430,805
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC624275, LOC666056, LOC100041238, Khdrbs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100B23.T7 (MSMg01no100_b23.b1)MSMg01-100B23.TJ (MSMg01no100_b23.g1)
ACCAG315899AG315900
length721728
length of high quality
(start - end)
557 (35 - 591)462 (72 - 533)
definitionCHROMAT_FILE: MSMg01no100_b23.b1 PHD_FILE: MSMg01no100_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:53 2005CHROMAT_FILE: MSMg01no100_b23.g1 PHD_FILE: MSMg01no100_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCT
GGCCAATACCGAATGGCTGAGAAACACCTGAAAAAATGTTCAGCATCCGT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCAA
GGATGTGGAGAAAGAGGAACACTCCTCCATTTTTGGTGGGATTGCAAGCT
TGTACAACCATTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACA
TAGTACTACCAGAGGATCCCGCAGTACCTCTCCTGGGCATATATCCAGAA
GATGTTCCAACTAGTAAGAAAGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGAAAAGTACCCAGATGCCCCTCAACAG
AGTTATGGATACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCA
GCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAATTGGTTGGACCT
GGAGGATCTTGAGTGAGGTAACCCAATCACAAAAGAACCCAAATGATATG
TACTCACTGATAAGTGGATATTAGTCCAGAAACTTAGAATACCCCAGATA
TAAGTTACAATTTGCAAAACACATTGAACTCCAGAAGACTGAAAGACCCC
GGGTGGTCCCTTTGCCCCCTA
TTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCCGCATAACAAGCTGGCCTCAGAGAT
CTGTGTGCCACTCACATGCTGGAATTAAAGGTGCTCACCACGACACCTAG
TCCTTAGTCAGACTAATTAAAGTGAGAAGACAAACACTAAATGTGGGTAT
CACCTTTTAGTCGCATCCCTGGCAAAAGGAATACTGAGGGGAAAGTTCCT
AGTTTTGTCTGCTTGTCTTCGCATCTTGCTGGTATGCTCATCAACCCTGT
TGCTGGCTCTGTCTTTGCTTTAGTCCCTGATGCTTGATATTCCACTAACA
CTGAATCCCCGCTTCATCAGCCTTACAACACACCCTGAAGATTCATGGCT
CTCCAAGAATCTTCAAGGTCTTCAGGATTCCTGAGAATTCTGAGGCATCC
AGCCTCATGGGCTGAGCTGTAACTGGGTTTTCACATCTCCAGTGTGCTGA
TAACTATTATTGGACTATCTAGACCCTGCTGTCTAAGCCTATGTAAGAAA
TCCTCCTTTGAATTCATATTCCTTCTATCATTTACAATTCTCTAAAAATA
TTTAAAAGGGACAAATTGGCACAAAACTTCCTCCAGAGAAAATTGAAGAT
AATAGAGCCAATCCTAAGAAATACTAAAGACCAACACTTAGTCCTCCAGA
CCCAGAGAAGCAGAAGTCAGGCAATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_b23.g1 MSMg01no100_b23.g1 CHROMAT_FILE:
MSMg01no100_b23.g1 PHD_FILE: MSMg01no100_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:53 2005
         (462 letters)



>mm_chr1_31430242_31431102
          Length = 861

 Score =  818 bits (423), Expect = 0.0
 Identities = 453/463 (97%), Gaps = 3/463 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccgcataacaagctggcctcagagatctgtgtgccactcaca-tgctggaattaaag 59
           |||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct: 564 actccgcataacaagctggcctcagagatctgcgtgccactca-agtgctggaattaaag 506

                                                                       
Query: 60  gtgctcaccacgacacctagtccttagtcagactaattaaagtgagaagacaaacactaa 119
           ||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgctcaccataacacctagtccttggtcagactaattaaagtgagaagacaaacactaa 446

                                                                       
Query: 120 atgtgggtatcaccttttagtcgcatccctggcaaaaggaatactgaggggaaagttcct 179
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 445 atgtgggtatcaccttttagtcgcat-cctggcataaggaatactgaggggaaagttcct 387

                                                                       
Query: 180 agttttgtctgcttgtcttcgcatcttgctggtatgctcatcaaccctgttgctggctct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agttttgtctgcttgtcttcgcatcttgctggtatgctcatcaaccctgttgctggctct 327

                                                                       
Query: 240 gtctttgctttagtccctgatgcttgatattccactaacactgaatccccgcttcatcag 299
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtctttgctttagtccctcatgcttgatattccactaacactgaatccccgcttcatcag 267

                                                                       
Query: 300 ccttacaacacaccctgaagattcatggctctccaagaatcttcaaggtcttcaggattc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccttacaacacaccctgaagattcatggctctccaagaatcttcaaggtcttcaggattc 207

                                                                       
Query: 360 ctgagaattctgaggcatccagcctcatgggctgagctgtaactgggttttcacatctcc 419
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 206 ctgagaattctgaggcatccagcctcatgggctgaactgtaactgggttttcacatctcc 147

                                                      
Query: 420 agtgtgctgataactattattggactatctagaccctgctgtc 462
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 agtgtgctgataactattattggactatctagaccctgctgtc 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 861
Length adjustment: 10
Effective length of query: 452
Effective length of database: 851
Effective search space:   384652
Effective search space used:   384652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)