BAC Information

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BAC

Clone NameMSMg01-100L04
Chromosome1 (Build37)
Map Location 131,686,319 - 131,686,604
singlet/doubletsinglet
Overlap geneThsd7b
Upstream geneLOC100042732
Downstream geneLOC100042745, LOC100042740, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100L04.T7 (MSMg01no100_l04.b1)MSMg01-100L04.TJ (MSMg01no100_l04.g1)
ACCAG316326AG316327
length1,590697
length of high quality
(start - end)
---288 (50 - 337)
definitionCHROMAT_FILE: MSMg01no100_l04.b1 PHD_FILE: MSMg01no100_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:39 2005CHROMAT_FILE: MSMg01no100_l04.g1 PHD_FILE: MSMg01no100_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAGAGGCGACTGACACCGCGCGGCGCGCTGTGGACCGAGGACGATAACA
GGAGGCGAGAGTTATNACATAGATTAGAGAAGAACTAAAGCACAATCGAT
TTACAATACACAATATAATTTGGCGGAGCGCTATATGCGCTGACGACGAG
ACTCTATCTTAACACATAACAGAAGAAGTAATAATACCATAGCTGTTCGT
TTGCTTTTACGATANACGCGTGAGTGATACGAGTCTCGTGCTCCCGCCTG
CCGTTCAGCGAATGCCCCAGAGATTGAGCCGCGTGAGTCAGTGACGCTCA
GCGAGTAGTAAGAGGGTGGTAGTAGGTGAGCGTCTACGCAGAATATATAG
ATAGATCCATAACACATAAGATCACAAATTATACATACAACAATATATAA
CATGAGCGGGTGAGATGATGCGTGGAGAGTGTGGGCGAGTTTATATATAA
TCATACATAATATGCGACCCTCGCACGCTTGTATATGTTATCGACGTCGC
ACCACTCCGCACAATAGTCCATATCTAACACAACACCATGCGATCATCAA
CACTATACACAATATAACACAAGACGCAAGACCAATATAATAGTAATAGA
CATATTATGATCATCGTATCATTACTATACCAGTATGTGNTCTATGTTAG
TATATCCGCTGCCACACACACATAAATATATTATATCACAACACAAACGT
ACCACACACCAAAGATAACTACGAGACATCATTACACTCGAGAATGTGAT
TAGTCCAGACTGCATAATAGTACCACGCGTGTTCTGTCCACGCTGACACA
CGCGCATACTGTGAGATACACAGCGATACTCCACCTGGTGTACTGACGAA
AGAGNTGGAGAGTACTGGTACAGTGTAAGTAGCATATAGTATGTTATTTA
TATATGAGTACGGCGCACACCCCCACACGCTGAGGTCGAGGTGTGGATAC
TATGGACGAAAGGATGTCGCCTGTACGACGAGAGGGACAGAGAGCGCGAG
AGGAGTGCGCTACTGAATGAGAGTAATATCGTCACGTACACTACACCACT
GATGTAGACTGATATATAGACAATGCTACTCTAACGCTATACACANCGAT
CATCTAATCCGCACTCGACATATCGTGTAGGCAGCGCGAGTCGCGCCTAG
AGTCGTGTAGGCTGCGCTGTGACGTCATTGCTGCTCACTCTAGACGCGCA
TACGACGTACCACGATGATCGACAGCCCGTCCCACGATGACTACTAACGT
GACGCACTANTCATANGCGCAACGCACGACACAGTAGATGAGTATATATA
TATTCGAATGTAATCGCGCGGNGCAAGTATCTCGACGATTCGATGCACGC
GGATCATACTATATCGTACATACTTGTACTTCCTCGTACTATGACCCGAN
AACATAGTACAACGCACGCCACACACAACAATATGAGAGCGCTTATATAA
CTCAGAGGCGATGCGTATGAAGAGTTAAATAAATGCGCGANCGTCGATGA
TATGTCGTGTGAGTGTGAAAACGATCGTACATCGTCGNGNATATGACGCT
GACTGCGCTCGCCTCATATAGACAATCTACATATTAGATG
GGCGGCCGCCTTTCAAAAAATTTAGGTGAACTATAGATTTACACAAGAAA
TTCACTCCATGCTCTCTATAATCTGTTTCCTCTCTCTCTGTATAGAATCA
AACTCAAGCCTCAAGAAATAAGGGTTTTAAAAATAAGATATTTAAAAGTT
TGCATGCTCCTATGTGACTTAAAGAGAGAAAAATGGGCTTTTAATAAAAA
AATAAAAGTCCAAAACAAGTCAGTTTAGTAGTTAAGAACTGAGTTTCATA
GATTAGGAATTAGACTGCTATGTGGCCAACATAGACATACTTCTTCTTTT
ATTGTGACAGTTCTGCCTTTTCTATACCCTGTCTTGTTTTTTCTCACCAC
TCCACCCCAAGCAGAGAATGGAAAACAACTTATTCCCAATTTTACATCTA
CTGACATAGTATACACTGGACAACTGGAGTCTCTCCTGGAATGAACACTT
CTCTAAGCACATCAGAATATGTGCAACTTCTAAGCAGATAGTTCACCCAG
AAAGGGGAAAACAATAAATCAGCCATATGTGTTTAGCTCTCGCTTCTGGA
GTCATGATACAAATGCTACACAGACCTACCTAAGGAGAGGTTGGAAGAAT
TTGGTTACTGAATAGTCTAATCTTGCTGGGTTTTCTCTGTGTTGAAGATA
TCACTATTCCCAGTCCCTATGTGCCACCAATGTGACTCCACCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_l04.g1 MSMg01no100_l04.g1 CHROMAT_FILE:
MSMg01no100_l04.g1 PHD_FILE: MSMg01no100_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:39 2005
         (288 letters)



>mm_chr1_131686119_131686805
          Length = 687

 Score =  501 bits (259), Expect = e-146
 Identities = 280/287 (97%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcactccatgctctctataatctgtttcctctctctctgtatagaatcaaactcaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcactccatgctctctataatctgtttcctctctctctgtatagaatcaaactcaagc 260

                                                                       
Query: 61  ctcaagaaataagggttttaaaaataagatatttaaaagtttgcatgctcctatgtgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaagaaataagggttttaaaaataagatatttaaaagtttgcatgctcctatgtgact 320

                                                                       
Query: 121 taaagagagaaaaatgggcttttaataaaaaaataaaagtccaaaacaagtcagtttagt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagagagaaaa-tgggcttttaataaaaaaataaaagtccaaaacaagtcagtttagt 379

                                                                       
Query: 181 agttaagaactgagtttcatagattaggaattagactgctatgtggccaacatagacata 240
           ||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 380 agttaagaactgattttcatagattaggtattagactgttatgtggccaacatagacata 439

                                                          
Query: 241 cttcttcttttattgtgacagttctgccttttctataccctgtcttg 287
           |||||||||  | ||||||||||||||||||||||||||||||||||
Sbjct: 440 cttcttcttggactgtgacagttctgccttttctataccctgtcttg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space:   189162
Effective search space used:   189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)