Query= MSMg01no100_l19.b1 MSMg01no100_l19.b1 CHROMAT_FILE:
MSMg01no100_l19.b1 PHD_FILE: MSMg01no100_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:42 2005
(433 letters)
>mm_chr1_72988163_72988995
Length = 833
Score = 793 bits (410), Expect = 0.0
Identities = 425/430 (98%), Gaps = 2/430 (0%)
Strand = Plus / Minus
Query: 5 gaattcaagactactctga-aagtccctccccaaaaaaggagactctcaaaacaggaacc 63
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gaattcaagactact-tgacaagtccctccccaaaaaaggagactctcaaaacaggaacc 401
Query: 64 atatttacagtcaaacatagcttgaattccttgagacctacatatgacaagtattccttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atatttacagtcaaacatagcttgaattccttgagacctacatatgacaagtattccttt 341
Query: 124 ggcctttttgatctgtagttttatctcattggcccatcatgtacctcagaaaccacctga 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gtcctttttgatctgtagttttatctcattggcccatcatgtacctcagaaaccacctga 281
Query: 184 ctgtttcttttactggagtaaagttctttagtaaagatgattatactcaccgggaactta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctgtttcttttactggagtaaagttctttagtaaagatgattatactcaccgggaactta 221
Query: 244 tgactgcaacttttggctgcagtacaagctcttgaaagtctgagacaggaagattgcctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 tgactgcaacttttggctgcagtacaagctcttgaaagtctgagacaggaagattgcctt 161
Query: 304 atgttcaaggccatcctggactacagagtgagctccataccagccagtactacagaataa 363
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 160 atgttcaaggccatcctggactacagagtgagctccagaccagccaggactacagaataa 101
Query: 364 agaccctgtttcaagaaaacaagaacaaggtccagtcatagtagtgcacatttataatgc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 agaccctgtttcaagaaaacaagaacaaggtccagtcatagtagtgcacatttataatgc 41
Query: 424 caagcgctca 433
||||||||||
Sbjct: 40 caagcgctca 31
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_l19.g1 MSMg01no100_l19.g1 CHROMAT_FILE:
MSMg01no100_l19.g1 PHD_FILE: MSMg01no100_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:42 2005
(432 letters)
>mm_chr1_72825418_72826249
Length = 832
Score = 804 bits (416), Expect = 0.0
Identities = 428/432 (99%)
Strand = Plus / Plus
Query: 1 cagtgggcaggccgagagggagcttgtgtttattctcttcaggaatgaagggcctgctgg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgggcaggctgagagggagcttgtgtttattctcttcaggaatgaagggcctgctgg 260
Query: 61 gtcttgttcacagagacactgtgaggaaccagctgagataaggatggccaccttcttgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gtcttgttcacagagacactgtgaggaaccagctgagataaggatggccaccttctttcg 320
Query: 121 ggggaggggtggactgaggcccgggagagagacagggctaggactctgactggtatgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggaggggtggactgaggcccgggagagagacagggctaggactctgactggtatgcat 380
Query: 181 tttaggaagtagacagttgagccaacataatttgaaaaagcattgtctgaggatgccctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaggaagtagacagttgagccaacataatttgaaaaagcattgtctgaggatgccctt 440
Query: 241 ctacctgagcagagagtggaggctactttcctccacgctcactcagtgttactgcgaccc 300
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 441 ctacctgagcagagagtggaggctcctttcctccacgctcactcagtgttactgtgaccc 500
Query: 301 ctacatcagtatcaaatggcaagctcaaggccacagctctgcttctccagggaaagggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctacatcagtatcaaatggcaagctcaaggccacagctctgcttctccagggaaagggaa 560
Query: 361 aatgtgaaaacttcacccaaacaggcaatgcaaaaagggattccattactgggctgtgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtgaaaacttcacccaaacaggcaatgcaaaaagggattccattactgggctgtgaa 620
Query: 421 tgcagctggctg 432
||||||||||||
Sbjct: 621 tgcagctggctg 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
