BAC Information

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BAC

Clone NameMSMg01-100M21
Chromosome1 (Build37)
Map Location 100,247,571 - 100,247,851
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
Downstream geneSlco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100M21.T7 (MSMg01no100_m21.b1)MSMg01-100M21.TJ (MSMg01no100_m21.g1)
ACCAG316397AG316398
length706767
length of high quality
(start - end)
473 (60 - 532)284 (126 - 409)
definitionCHROMAT_FILE: MSMg01no100_m21.b1 PHD_FILE: MSMg01no100_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:48 2005CHROMAT_FILE: MSMg01no100_m21.g1 PHD_FILE: MSMg01no100_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTATACGATCACTTCCAGAGAGGACCGCGGAATTCAT
TCTTCCAAGGATATATAGTCAGGAGCTGATGCAGAGACCATGAAGGAGTG
CTGGCTTGATTTTTGGTGGTGGGAGGGGTCAGGTGCAATAACTTATCTTT
CACATTAGTCCCCACACCATGAAACGTCTAAGAATTCCACTGATGTAGGA
CATTGCATTTTGGTAGAATTTATTTCCCATCCTCTGAGGCATATATGTGT
TACCAACAAGGTCAAAGTAGTTGTTATGTACTGCTCACTTGGTCCAATAA
GCATAATGTCATCTATACAATGGACCAATATGAGTGAGAGAGACAGATGA
CCAAGAAATTTTCAAACTATGTTAAGACACAGGGATGGAGCTTTGATATA
TCCTTGAGGTAAAACTATAAAGGTATACTGCCGGCCTTGACAATTGAAAA
CAGATGGCTTCTCCTGGCCCTTATGATCAAGTATCAAGAGAAAGGCATTT
GCTGGATCTAGCTGCATACCATGTGTAGTGGCTATTCCTGGTTGTCAACT
TGACCATATTTGTAATGAACTACCATCCGGAATTGTAAGGCTCACCAGTG
ACCCTTATCTGGAGGCTTGGAGATCCTTATCTGGATCTTGGTTTGAAGAT
CTTGACCCTAGTGGCTATGGATTCCAAAATATTGAATCTTCGAGTTTAAG
GAACCT
NNNNNNNNNNNNNNNNNCCCCTTTTTNTTTCCCGCNNNNCCATAACTNNN
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCATTTTGATGTAATTCAAAATTT
ATTAAACATTGTCTTTTAGCCAGATGTATATTGTTTCCCTTGAGAATGAT
AAAAATCACTAAAATAAAAAAATAACAGGGACTAGGTCTGTTGCCTGGAA
ACACTTCACATTTGATAACCTCTCTTAAAATGTACCTTAGTCTTTATAAA
ATAGAAAAGCTAGATAGGAGGGGAAGGATATACAGAGAAGTAATACAGGT
TTCTGCTGATATTGGTTTCTAGTTTCAGCCCTGTTAAATTCAAAGTCTCC
TGCATATAAAATGCAAGGAAAAGAAGCACAAAGTCTAGGTTTCTGCCCTT
CAAACACTAATGAATTCCATAGGTCAGGAAAGTTTACACTGAATCAACCA
AAGCATAGCTAATAAGGAAGTAGATTTGTTTTTCATCCACAGGACGAGTC
CTCGATTCCACAGGTGGGTCTGATTTCTTTTTTGTGACTATAGCATAAAT
AATAGCCTCAAATACCAGTAAATTGTTTTGCATAATTTGCCTAAAACAAA
ACTGGATCCCTGGTTTTGCATATTTTCTCAACCATTCTCAATGCAAATAT
AATTTGCATTGAAAATTTTGTTACAAAATAATTGACTCTAGAGAGACCCA
TTCCAAAATGTTCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_m21.g1 MSMg01no100_m21.g1 CHROMAT_FILE:
MSMg01no100_m21.g1 PHD_FILE: MSMg01no100_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:48 2005
         (284 letters)



>mm_chr1_100247371_100248054
          Length = 684

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcattttgatgtaattcaaaatttattaaacattgtcttttagccagatgtatattgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttcattttgatgtaattcaaaatttattaaacattgtcttttagccagatgtatattgtt 422

                                                                       
Query: 61  tcccttgagaatgataaaaatcactaaaataaaaaaataacagggactaggtctgttgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcccttgagaatgataaaaatcactaaaataaaaaaataacagggactaggtctgttgcc 362

                                                                       
Query: 121 tggaaacacttcacatttgataacctctcttaaaatgtaccttagtctttataaaataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggaaacacttcacatttgataacctctcttaaaatgtaccttagtctttataaaataga 302

                                                                       
Query: 181 aaagctagataggaggggaaggatatacagagaagtaatacaggtttctgctgatattgg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 301 aaagctagataggaggggaaggatatacagagaagtaatacaggtttctgctgatactgg 242

                                                    
Query: 241 tttctagtttcagccctgttaaattcaaagtctcctgcata 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttctagtttcagccctgttaaattcaaagtctcctgcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)