BAC Information

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BAC

Clone NameMSMg01-101A18
Chromosome1 (Build37)
Map Location 27,658,574 - 27,658,817
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik, LOC677427
Downstream geneLOC100040952, EG433281, EG665903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101A18.T7 (MSMg01no101_a18.b1)MSMg01-101A18.TJ (MSMg01no101_a18.g1)
ACCAG316561AG316562
length795790
length of high quality
(start - end)
275 (103 - 377)248 (125 - 372)
definitionCHROMAT_FILE: MSMg01no101_a18.b1 PHD_FILE: MSMg01no101_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:07 2005CHROMAT_FILE: MSMg01no101_a18.g1 PHD_FILE: MSMg01no101_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTNTTTTTTNTTTNNNTTTTTTTTTTTCTTCCTTTCCCCGCTTCTCG
TTCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTTCCCTGAGCCCCATTTTTTAATGGGGTTATTTG
ATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCT
GTTCTGTTCAGGAATTTTTCCCCTGTGTTCTTATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGCCTCTGGTTTTATGTGAAGTTCCT
TGATCCACTTAGATTTGACCTTATTACAATGAGATAAGTATGGATCGATT
CTTATTCTTCTACACGATTATCAACCTGTTTTGTCAGCTCCTATTGTTGA
AAATGTTGTCTTTCTTCCCCTGCATGGTTTTAGCTCCCTTGTCGAACATC
TAGTGACCATATCGTGCGTGCCTTCAATTTTTGGGTCTTTAATTCTATTT
CATTGGACTACTTGCCTTGTTTTTATTACTGCTCCATGCCATTTCTTCCC
ACAATTGCTTCTGTATGATAAGTTTTACGGCTTGTCATGGTAGAATTCGT
TCTGAAAATACTTTTATCCTTGAATAAAACTTATTGCATATCTAC
NNNNNNNNNNNNNAAAANNNNTTTTTTTCCTCTNTTCTTCTCAAACTAAA
TACGATGATGTGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCTCGTGCTGTCTTTGATTTTCAA
TAAACTGGTTGTAATGTAGTTCCTAGATGCTTTGAAAAGTTATAAATTAA
ATTATGGTTAGATGTATACTTCTGCTTTTTTTTTCCAGAAAAAAAAATGT
TTTTTGGAAGCCCATGATCTGTTTATATGTGATAATTTTGAAGTTAACCA
AAAAAAAAAAAACAAAAAAAAACACCAAAAAAAAAACAATAACAATAACA
AATCTATTGAAAATCAAATAGGCTATTTCTTCACTACTTTGCATAGAAAA
GTAATGCTATAGTCTCCATGAGTACTGAGTTATTCTGATTATTTCTCTTT
CAACATGACATATTTAATCACTGCTATACTTAAGGATTAATCAAATCATA
TATTTCTTATAATATGTCCATCAAAACTCACCTTTTACTTGAATGGATAG
ATGAACCATCCACAGATTGTCCCACTCAGGGATCCATCCCATAATCAACC
ACCTAAATAAAGACTTTATTTGTTATGCTTTAATTATTTTGTTGATATGT
CCCTTAATAAAAATTCTTCCTTGTGATTTTATGCTCAATGATTGTTAAAT
TCCCATATTGGATGCTTCCATATCTCCTTTTGAATGTATACTAGGTTCCT
CCTATTTATGGAATTAATGAAAATTACCCTAGTACATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_a18.g1 MSMg01no101_a18.g1 CHROMAT_FILE:
MSMg01no101_a18.g1 PHD_FILE: MSMg01no101_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:07 2005
         (248 letters)



>mm_chr1_27658439_27659088
          Length = 650

 Score =  412 bits (213), Expect = e-119
 Identities = 238/251 (94%), Gaps = 10/251 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcgtgctgtctttgattttcaataaactggttgtaatgtagttcctagatgctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 attctcgtgctgtctttgattttcaataaactggttgtaatgtagttcctagatgctttg 320

                                                                       
Query: 61  aaaagttataaattaaattatggttagatgtatacttctgcttttt--ttttccagaaaa 118
           ||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||
Sbjct: 319 aaaagttataaattaaattatggttagatgtgtacttctggtttttatttttccagaaaa 260

                                                                       
Query: 119 aaaaatgttttttggaagcccatgatctgtttatatgtgataattttgaagttaaccaaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaaaatgttttttggaagcccatgatctgtttatatgtgataattttgaagttaaccaaa 200

                                                                       
Query: 179 aaaaaaaaaa-caaaaaaaaacaccaaaaaaaaaacaataacaataacaaatctattgaa 237
           |||||||||| ||||| ||||||       ||||||||||||||||||||||||||||||
Sbjct: 199 aaaaaaaaaaacaaaacaaaaca-------aaaaacaataacaataacaaatctattgaa 147

                      
Query: 238 aatcaaatagg 248
           |||||||||||
Sbjct: 146 aatcaaatagg 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 650
Length adjustment: 9
Effective length of query: 239
Effective length of database: 641
Effective search space:   153199
Effective search space used:   153199
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)