CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTC
CATATTCTCGGAAGAAATTATTCACAGAAAGGCTACAATTTGGGGGGTTG
AGTAAGAAGCCAACTGATTGTCAGGTGTTAGATAATGTCTCCCAGCACCC
AGAATGCAGGATTCCTTAATGCAGGATTCCTTTCCTTGGGATTATTTCTT
TTCTTTGGGACACTTTATCTCTTTTCCTGAAGAGAGATGCCTAGTTATCA
AGGCTTCTTGAGAAAGATGATGTGCTGGGCTGGAGAGATGGCCCAGTGGT
TAAGAGCACTGACTGCTCTTACTGAGGTCCTGAGTTCAATTCCCAGCAAC
CACATGGTGGCTCACAACTATCTATAATGGGATCAGATGCACTCTTCTGC
TGTGTCTGAAGACAGCTACAGTGTACTTATATATAATAACTAAATCTTTA
AAGAGAGAGAGAGAAGGATGTTGTTTAGTATAATTATTAATTAATAAGTC
CTGGTTGCAGGTTCTGCTACCCACTCCAAAGGTCTATAAAACCTTTATAT
TTGATAAGACTTAATCAGCACAATAGCTGGGCCACTGCCTAAGCTCCATG
CAGTTAATCCTGAGTTATTACTGATTCTGTTGTTCTATCTTGGCTTCTCT
GGATCTAGTTGGGCAACCCTCTAGGCCATGCTCTCCCAGCTCCTTC

GTGGGGGGATAGGAAGGGGTGTGTGGTCTCACCCCACCCCCCCCACCCNN
CNCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACCCAGATGTCAAGTTCCTA
TAATCCCCACAAAGAGCTGAGCCTAAGAAAGAGAGTGGATGGGGCTGGGG
AAGTGACTTATCAATTAAGAGAGTATACTACCTTTGCAGAGGACCAGAGT
TCAGTTCCCAGGTTCCCAGCATCCACCCATGTGGGGTAGCTTACAACCAT
CTATCACTGCTTTTTCAGACAATCCAATACCTCTGGCCTGCACGCACGCA
CGCACACACACACACACTAACACACACTTTTTCTCACACACACACACACA
CACACACACACACTCACACACACACCCACATGAACCCAGATGAGCACTTG
ACATGACTTGACCATCTTACCTCTCCCAGGATGTCATTGAAGTAACTTCC
CCCTTTGGAATCAAGAAAACTAATCCCAATGCTTTGGTTAGAGAAAGCCC
CCAGCAACTATGTCGAACAAGCCAGCAGCAATTTGTTTCTATTCTTTTCC
TTAAAACTGCCGGAAGTTATCCTGGATTTCATTAGCTCAAACTTCTCCTT
TTCAAAAGAAAATTCCTTTGAAATCTTCTGGGAAATTAACTTGGCTCAGG
GCTGGGCGCCCAATGCCCTTGGAAATCCAGAAAAACTGAGGTTTTAACCC
CCCTGAAAGTTACATTTTTCGCACCAAGGAAAACTAAATT

Query= MSMg01no101_k11.b1 MSMg01no101_k11.b1 CHROMAT_FILE:
MSMg01no101_k11.b1 PHD_FILE: MSMg01no101_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:57 2005
         (628 letters)



>mm_chr1_179684228_179685255
          Length = 1028

 Score =  766 bits (396), Expect = 0.0
 Identities = 405/408 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattcacagaaaggctacaatttggggggttgagtaagaagccaactgattgtcaggtgt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tattcacagaaaggctacaatctggggggttgagtaagaagccaactgattgtcaggtgt 349

                                                                       
Query: 61  tagataatgtctcccagcacccagaatgcaggattccttaatgcaggattcctttccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tagataatgtctcccagcacccagaatgcaggattccttaatgcaggattcctttccttg 289

                                                                       
Query: 121 ggattatttcttttctttgggacactttatctcttttcctgaagagagatgcctagttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ggattatttcttttctttgggacactttatctcttttcctgaagagagatgcctagttat 229

                                                                       
Query: 181 caaggcttcttgagaaagatgatgtgctgggctggagagatggcccagtggttaagagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 caaggcttcttgagaaagatgatgtgctgggctggagagatggcccagtggttaagagca 169

                                                                       
Query: 241 ctgactgctcttactgaggtcctgagttcaattcccagcaaccacatggtggctcacaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ctgactgctcttactgaggtcctgagttcaattcccagcaaccacatggtggctcacaac 109

                                                                       
Query: 301 tatctataatgggatcagatgcactcttctgctgtgtctgaagacagctacagtgtactt 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 catctataatgggatcagatgcactcttctgctgtgtctgaagacagctacagtgtactt 49

                                                           
Query: 361 atatataataactaaatctttaaagagagagagagaaggatgttgttt 408
           |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 48  atatataataactaaatctttaaagagagagagacaaggatgttgttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)