BAC Information

Click to search

BAC

Clone NameMSMg01-101M24
Chromosome1 (Build37)
Map Location 91,750,626 - 91,750,922
singlet/doubletsinglet
Overlap geneCentg2
Upstream geneLOC208347, Sh3bp4, LOC383542, EG665688
Downstream geneGbx2, Asb18, Iqca, Cxcr7, Cops8, Col6a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101M24.T7 (MSMg01no101_m24.b1)MSMg01-101M24.TJ (MSMg01no101_m24.g1)
ACCAG317126AG317127
length790827
length of high quality
(start - end)
308 (108 - 415)106 (130 - 235)
definitionCHROMAT_FILE: MSMg01no101_m24.b1 PHD_FILE: MSMg01no101_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:10 2005CHROMAT_FILE: MSMg01no101_m24.g1 PHD_FILE: MSMg01no101_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTTTTTTTTTTTTNNNTTTTTTTTTTTTCTCCCTTTTCCCCCTGTT
CTTTACATCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAG
AGGATCCGCGGAATTCATTGCTTCCCCCGGAAGATTAAGGTTTTAGCAAC
AAGTTAAACCCATGCTGCTAATTCAATTTTCAACATTATTCTAGCAATGC
AACCACTAGACAAGTCCTGAACTTTGAAGGCTGGGGCAGTGTGCCAGAAT
GGTCAAACCCCCATCCCATCCCATCCCATCCCCAGTACATCATAATGGTA
AGGCTGACTTACCCTGTCAGCATCACCTGAGTTGTAACAAATCACCATGA
GTCTAGAACCAGACCCACACAGACAGTGCCTGTTTCAATGGGTTTTGGGG
TGACCAGTCAATGAGACTGGGCACACTTTTGTAAGAATACACAAAGCATA
TCTCTGGCAGATGCACCCCCCTGTCCAACTCTACTCCTTTAAGTTATGGA
AGCCAGAAGCAGAAACACTGCTACTCCTGACTGGTAATCTGAATTAAGAA
GTGTCTTGCAGCAGCATGGTGGCACACTCTTTTAATCCCAGCACTCTGGA
ATCAAAGGCAGATTTTTGCGAGATCAAGAGCAGCCTGAATTAGAGAGGGA
GTTCTAGGACAGCCACATCTACAGAAAAACCTTAACCTGAAAAAACCCAA
CCCCACCCAACCCAACCAAAACACATCTAACATTATCCAACCTAACCTAA
CTAAACCAATTTAACGCATGCTTTGGCCCACTTCTTTACT
NNNNNNNNNNNNNNNNNNNTTTTTTTTTTTCTTCTNTTTCCCTTCCCTTT
TTTCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACACAACTGAGCATGGCC
TTGAATTGCTGATCCTCCTGCCTCTGCCTCTCAAGTGCTGGAACTATAAG
GCATATGTCACCACACATGCTTTATTTAATAGTGACCAGAGTAGAACCCC
ATCCTAACATTGGGTTTAATTATGGGCGTGGTGTTGGTTGGCGAAGGCGC
TTCTTTGCTCTTTCTGTTCTTCCTTCGTTAGATCTTCGCCCTCTTGCCTT
CTTCATTCTCATCCTTTATCGCTTATTTTTCTTCTCTGTCTTCTATTCTT
CCCCTCTTCGTTCTTGTTCTCTTCCTGCTCTACTCTCTTCTGTTTCCCTC
TTCGTCTTCCTGTTTTATTCCCCCTATTTTTTTATCTCCACCCCCACCTT
CTGTTTTTCTATTTTCTACTCCTCATCATCTTTTTCTCTTTTCTTATACC
TCTTCTCTTTACACAGCATTTCCATTGCTCTCCACCCCACTTTCTTTTAT
TTTTTATATTTTTTTTATATTATTTCTTACACTTAAAATTATTCTTATAT
ATCTTTATTTTCAAATCATCTCTTCCCTCTTACCTTTCTATATACTTATT
CTTTTTATTTTTCCATTATTTTTCTTCTATTTTCTTTTCTTATTTTCTCC
TTTTATGATATTTTTTTACTTTCTCTCATTTCTTTTAATTTTTTCACCTT
ACTGCTTTCCCCTTCACTCCCAGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_m24.b1 MSMg01no101_m24.b1 CHROMAT_FILE:
MSMg01no101_m24.b1 PHD_FILE: MSMg01no101_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:10 2005
         (308 letters)



>mm_chr1_91750571_91751278
          Length = 708

 Score =  516 bits (267), Expect = e-151
 Identities = 285/297 (95%), Gaps = 10/297 (3%)
 Strand = Plus / Minus

                                                                       
Query: 22  ggaagattaaggttttagcaacaagttaaacccatgctgctaattcaattttcaacatta 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggaagattaaggttttagcaacaagttaaacccatgctgctaattcaattttcaacatta 293

                                                                       
Query: 82  ttctagcaatgcaaccactagacaagtcctgaactttgaaggctggggcagtgtgccaga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 292 ttctagcaatgcaaccactagacaagtcctgaactttgaaggctggggcagtgtgtcaga 233

                                                                       
Query: 142 atggtcaaacc----------cccatcccatcccatcccatccccagtacatcataatgg 191
           |||||||||||          |||||||||||||||||||||||||||||||||||||||
Sbjct: 232 atggtcaaacccccatcccatcccatcccatcccatcccatccccagtacatcataatgg 173

                                                                       
Query: 192 taaggctgacttaccctgtcagcatcacctgagttgtaacaaatcaccatgagtctagaa 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 taaggctgacttaccctgtcagcatcacctgagttgtaacaaatcaccatgagtctagaa 113

                                                                    
Query: 252 ccagacccacacagacagtgcctgtttcaatgggttttggggtgaccagtcaatgag 308
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 112 ccagacccacacagacagtgcctggttcaatgggttttggggtgaccagtcaatgag 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)