Query= MSMg01no101_p24.b1 MSMg01no101_p24.b1 CHROMAT_FILE:
MSMg01no101_p24.b1 PHD_FILE: MSMg01no101_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:26 2005
(639 letters)
>mm_chr1_101609685_101610723
Length = 1039
Score = 1129 bits (584), Expect = 0.0
Identities = 620/638 (97%), Gaps = 10/638 (1%)
Strand = Plus / Plus
Query: 2 ggaattcagtattcattgtctcactatcttgcaattgagatttcttggtctggtacatac 61
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcagtattcaatgtatcactatcttgcaattgagatttcttggtctggtacatac 261
Query: 62 agcaaccagaattatacacggatagacagattgtgagctatggtgatgtagataatttat 121
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agcaaccagaattatacaaggatagacagattgtgagctatggtgatgtagataatttat 321
Query: 122 attctttaagggaaggagggaggtaagagccaatggatcctctctgccatcattgcctat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 attctttaagggaaggagggaggtaagagccaatggatcctctctgccatcattgcctat 381
Query: 182 ccaggaatcacacatccctgctctcccttgactgtaaatggtcctttgataggtgtgtag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccaggaatcacacatccctgctctcccttgactgtaaatggtcctttgataggtgtgtag 441
Query: 242 gaagtatgatgttaacagaaggggaaatttttgtttcagtttccatgagatcaccaccca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaagtatgatgttaacagaaggggaaatttttgtttcagtttccatgagatcaccaccca 501
Query: 302 agatggatgagggttagagaataagaggaagacaaagcccagtttagtttctgctagaag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agatggatgagggttagagaataagaggaagacaaagcccagtttagtttctgctagaag 561
Query: 362 agacagacagatagacaaccatcatagctcatttacagtgaaataactgctcagtccatt 421
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agacagacagctagacaaccatcatagctcatttacagtgaaataactgctcagtccatt 621
Query: 422 tacaaaatgttctgaatcttcataggtgttagaaattaggacataatagcaaaattctct 481
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tacgaaatgttccgaatcttcataggtgttagaaattaggacataatagcaaaattctct 681
Query: 482 taatatatccctttcttttccttagtgttgtcaatgtgagacagaatcttctagttctaa 541
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taacatatccctttcttttccttagtgttgtcaatgtgagacagaatcttctagttctaa 741
Query: 542 acatcagagagacagagacagagagagacagagagagaaaggggtcgggggaggttcaca 601
|||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 742 acatcagagagacagagacagagagaga----------aaggggtggggggaggttcaca 791
Query: 602 ctactgttataactgccaaacctatgggcagccaagca 639
||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ctactgttataactgccaaacctatgggcagccaagca 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_p24.g1 MSMg01no101_p24.g1 CHROMAT_FILE:
MSMg01no101_p24.g1 PHD_FILE: MSMg01no101_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:26 2005
(290 letters)
>mm_chr1_101785866_101786555
Length = 690
Score = 451 bits (233), Expect = e-131
Identities = 270/289 (93%), Gaps = 12/289 (4%)
Strand = Plus / Minus
Query: 2 tccttctgctcggttcagcttttagtgctgcatttcatgtaattaaaggaaataacgtca 61
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 327 tccttctgctctgttcagcttttagtactgcatttcatgtaattaaaggaaataacttca 268
Query: 62 aggatgatttcttttggcctgtggaattcaacaataatatgtgagctccaaaaagtattt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aggatgatttcttttggcctgtggaattcaacaataatatgtgagctccaaaaagtattt 208
Query: 122 taggtttagtctctctgtttctgtctctgtctctctctgtctctctgtctctctgcctct 181
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 taggttcagtctctctgtttctgtctctgtctctctctgtctctctgtctctctgcctct 148
Query: 182 gtctctctcgctttccctctaccccctctctgtttgtgagtgtgtgtgtgtgtgtgtgtg 241
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 gtctctctctctttccctctaccccctctctgtttgtgagtgtgtgtgtgtgtgtgtgtg 88
Query: 242 tgtgtgtgtgtgtgtatgtgtgagtgcatgtatgtacatgtaaagggta 290
|||||||||| || || |||||| |||||||||||||||
Sbjct: 87 tgtgtgtgtgagt--at----------atgtatatacatgtaaagggta 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
