BAC Information

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BAC

Clone NameMSMg01-102B10
Chromosome1 (Build37)
Map Location 142,175,747 - 142,176,030
singlet/doubletsinglet
Overlap geneKcnt2
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102B10.T7 (MSMg01no102_b10.b1)MSMg01-102B10.TJ (MSMg01no102_b10.g1)
ACCAG317330AG317331
length776726
length of high quality
(start - end)
245 (133 - 377)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no102_b10.b1 PHD_FILE: MSMg01no102_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:33 2005CHROMAT_FILE: MSMg01no102_b10.g1 PHD_FILE: MSMg01no102_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNCCCCNNNNNCCCCCCCCNNCCCCCAATAA
AAGNNAAAATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGA
GGGACCGCGGAATTCTTCACTTTCTAGAAAAAAATTACTAAAGTATAAAT
TAGAAGAAAACTAAATTTGAAAAATGGTTAACTATAAATTAACTTAGGAG
CACATTTTAAAATCCCAAGTGACATTAAAAGGAATGCATATCAACACTAT
GATGTTGTAACATTTTAAAGGTATTTATTTTAAAAAAAATAAATTGAGAT
AAAACTCACACATTTATAAGGATATACACAAGAAAAAAAAATGACATGAC
ATAAACATATCGGTACAAAGATTGGAGTTTTTACATCAAAACTGTGTCAT
GCACACTACTCAAGAATTCTCTTCCCCCCCCCACCCCCTACAGAAATCAG
AGTTAATTAGCAGTTAAAATGTTATTATATCAAAGATGTGTTTAGCTATT
TTGTTTAATGGTAAATTATAATTTTATAATCATCTTGAGTCAAATGCACA
GCAAGCTAAAAGCACTTAGTACTATATAACTAAGTTTTCTAAATGTTTTG
CTGTATTATGGCATAAGATCAACCAGGAGCGTTTAGGTGGATTATACTTT
ATCAGGAATCTTAAATATTCCCTTATACCTCTGGACACAATGAAACATTT
TTGCCCATTTCACTTTATACGGTACCTAAACCCACGAGATTCCATGTGAA
AGCAGGCCTGATTACTCTCTGATACG
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCTGAAATTCCTCCATTGCACTTAAATTCAATGAAAGA
CCATACAATGGTCGCTCAATAGTAAGAAACAATCAGGGCTAACTTTGTTT
TAAGAATGAAATACACAATGAAAAGGAAATCTTCAAAGGCATATTTAAAA
TAAGATGAAAGCACAAATTTTAATTCATAAAATATTTACGTATGTATTTG
TTTACTTCAAAACCACATGCAACAGAAAATGTTTTGCTTATTTTGTAGTG
AGCATTAGAAAAAAAAAAAAGAGTCTCCTGTGGTAAGATGGTTCAGCACT
AATTGTTTACAGGGTTCTCTACCACCGCCCACGCTGAAGAGATGGCTCAG
AATACTTGCTGCTCCAGGTGCAGTTCACAGCATCCACAAGATTATTAGCA
ACCAAAATCAACTTCGCTTACAGGGAAACTTTCTCCGCTTTCTGGGGATG
CTCATACATGCTTGCAAACTAAATACTTCACGCTTATAAATAACATAAAT
AATACCTTTTAAAAAGTTACCTAGTGCTAGGCAGTTCTGGATTCTAAACA
CACCTCAGGAAAAAATCATATTTGATTAATCTCATTGCGGAACTCAGCAT
GATGGAAGCCAGACTTTCCTTCCCTTCCTTCATTTCCTTCCTTCCTTCCT
TCCTTCCTTCCATTCTTTCCTTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_b10.g1 MSMg01no102_b10.g1 CHROMAT_FILE:
MSMg01no102_b10.g1 PHD_FILE: MSMg01no102_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:33 2005
         (286 letters)



>mm_chr1_142175547_142176230
          Length = 684

 Score =  518 bits (268), Expect = e-151
 Identities = 281/286 (98%), Gaps = 2/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgcacttaaattcaatgaaagaccatacaatggtcgctcaatagtaagaaacaatca 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 484 cattgcacttaaattcaatgaaagaccgtacaatggtcgctcaatagtaagaaacaatca 425

                                                                       
Query: 61  gggctaactttgttttaagaatgaaatacacaatgaaaaggaaatcttcaaaggcatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gggctaactttgttttaagaatgaaatacacaatgaaaaggaaatcttcaaaggcatatt 365

                                                                       
Query: 121 taaaataagatgaaagcacaaattttaattcataaaatatttacgtatgtatttgtttac 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taaaataacatgaaagcacaaattttaattcataaaatatttacgtatgtatttgtttac 305

                                                                       
Query: 181 ttcaaaaccacatgcaacagaaaatgttttgcttattttgtagtgagcattagaaaaaaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 304 ttcaaaaccacatgcaacagaaaatgttttgcttattttgtagtgagcattag--aaaaa 247

                                                         
Query: 241 aaaaagagtctcctgtggtaagatggttcagcactaattgtttaca 286
           ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 246 aaaaagagtctccggtggtaagatggttcagcactaattgtttaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 684
Length adjustment: 9
Effective length of query: 277
Effective length of database: 675
Effective search space:   186975
Effective search space used:   186975
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)