NATAGAGCNNNNGATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCGCGGAATTCCACTAAAACGCACTTTTTGTCATTTCAGTCTTT
TTAGTTTGCCACCTCTATGACAAGGAACTGGATTACATGATTAATTCTCT
TACCTCCTGTTTCCTGGAGACATTTATGTCAGGAGGGAATGAAACATATT
TGTAAGGAATTACATGCTTGATCATTAAGTACATTTTGTCAAAATAGTTC
TTTTTTTTGAGTAAAAGTTGTTTGTGTACAGAAAGCATTTTGGAGAATAG
TTTTTCTTATATAGGAAAGTAGTATGTTGTCATTGTTTGTTTTGTTTTGG
TCTTCTGATGGTTTAAGTGGATATTTTCAAATTTTGAGTAAAATCCTCAA
AAGCAGAATTAGTGACCTCATAACAGAGCACTCAGAAAAGTGTGTGGCTC
CTTCCACCATCGGAAATGATAGCTAAGAGTCTGGGTACAGAATCTCTGCA
GAGACTTCATCTATATTTCCTCTCTTCTACCCCTGTAGAAGCAAATATTC
ATATTTTCAGTGTAATTTACAATACTTTGTTAGGACAGTCTATGGAGATT
AAAGTAAAAATTATGCAGGCAACTGATAATAGTCAAAGATGCTTAAGACC
CCAGTTGGTAAGGCCTATTCTGTAAGACAGAAACAAATTTCCATGCCACT
TAAGCTCAGTGTTTATAAAAGGAGATAAAAAAACAAACTAAC

AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAGCCCAGGGTCAGCTCAAGGACTACCTAG
GGCATTGGTGAAGGCCGGCAAGCAAAGTTCCATTTTGCTTAGGTATTTGG
CAAGTCATTGATTTGAGGCACCTATAACAAAACAATACTGAAAGGAAGCA
CACAGAACCATTCACAAGGACAAAATTGGAGCATACATGCTATGGAATGC
AACAGTTCCAGGAGACTAAGTTTCCGTGAAACTCTTTGCCTCAAGACTGC
ATCCAGGATTTTGGCCTGTCATGTGTGTCACTACTGGAGTGGATGTAGCA
CTTCATGTCATCTGTGAATTGTATCTTGGGTATTTCGATGTGATAAGTAT
ATCCAGTTATCAATGAATACATACCATGTCTGTTCTTTTATGTTTAGATT
ACCACACTCATGATAATATTTTCTAGTTCCATCAATTTCGCTAAGTTTCA
TGAAGTCATATTTTTAAATAGTTGAGTAGTACTCCATTGTGTAAATGTAC
CACATTTTTGGTATCAATTCCTCTATTGAAGAATATTTTCTAGTTCCATC
AATTTCGCTAAGAGTTTCATGAAGTCATATTTTTAAATAGCTGAGTAGTA
CTCCATTGTGTAAATGTATCATATTTTCGGTATCAATTCTTCTATTGAAA
AACATT

Query= MSMg01no102_c11.b1 MSMg01no102_c11.b1 CHROMAT_FILE:
MSMg01no102_c11.b1 PHD_FILE: MSMg01no102_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:39 2005
         (658 letters)



>mm_chr1_112400208_112401265
          Length = 1058

 Score =  830 bits (429), Expect = 0.0
 Identities = 493/529 (93%), Gaps = 27/529 (5%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccactaaaac-gcactttttgtcatttcagtctttttagtttgccacctctatga 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattccactaaaacagtactttttgtcatttcagtctttttagtttgccacctctatga 469

                                                                       
Query: 65  caaggaactggattacatgattaattctcttacctcctgtttcctggagacatttatgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caaggaactggattacatgattaattctcttacctcctgtttcctggagacatttatgtc 409

                                                                       
Query: 125 aggagggaatgaaacatatttgtaaggaattacatgcttgatcattaagtacattttgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aggagggaatgaaacatatttgtaaggaattacatgcttgatcattaagtacattttgtc 349

                                                                       
Query: 185 aaaatagttcttttttttgagtaaaagttgtttgtgtacagaaagcattttggagaatag 244
           |||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 348 aaaatagttc-tttttttgagtaaaagttatttgtgtatagaaagcattttggagaatag 290

                                                                       
Query: 245 tttttcttatataggaaagtagtatgttgtcattgtttgttttgttttggtcttctgatg 304
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| 
Sbjct: 289 tttttcttatataggaaagtagtatgttgccgttgtttgttttgttttggtcttctgatt 230

                                                                       
Query: 305 gtttaagtggatattttcaaatt-----------ttgagtaaaatcctcaaaagcagaat 353
           |||||||||||||||||||||||           |||||||||||||||||||||||| |
Sbjct: 229 gtttaagtggatattttcaaatttcatttggtcattgagtaaaatcctcaaaagcagagt 170

                                                                       
Query: 354 tagtgacctcataacagagcactcagaaaagtgtgtggctccttccaccat--------- 404
           ||||||||||||||||||| |||||||||||| ||||||||||||||||||         
Sbjct: 169 tagtgacctcataacagaggactcagaaaagtctgtggctccttccaccattggaatata 110

                                                                       
Query: 405 ---c--ggaaatgatagctaagagtctgggtacagaatctctgcagagacttcatctata 459
              |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ctgctaggaaatgatagctaagagtctgggtacagaatctctgcagagacttcatctata 50

                                                            
Query: 460 tttcctctcttctacccctgtagaagcaaatattcatattttcagtgta 508
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  tttcctctcttctacccctgtagaagcaaatattcatattttcagtgta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)