Query= MSMg01no102_f02.b1 MSMg01no102_f02.b1 CHROMAT_FILE:
MSMg01no102_f02.b1 PHD_FILE: MSMg01no102_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:52 2005
(173 letters)
>mm_chr1_96400034_96400605
Length = 572
Score = 311 bits (161), Expect = 1e-89
Identities = 170/173 (98%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 1 aggcacgggacatctgaacatgtctttttcatttatttattgtttgtcgccgaggattaa 60
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 aggcacgggacatctgaacatgtctttttcatttatttattgtttgtggt-gaggattaa 259
Query: 61 tatataattttctttatcactgtcagtcatgctttgtctagaacagaaaaccaaagtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatataattttctttatcactgtcagtcatgctttgtctagaacagaaaaccaaagtgtg 319
Query: 121 ctaagcagccacctagtaaaatggtggactgctttaatgaagagaggaaagga 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctaagcagccacctagtaaaatggtggactgctttaatgaagagaggaaagga 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 572
Length adjustment: 8
Effective length of query: 165
Effective length of database: 564
Effective search space: 93060
Effective search space used: 93060
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no102_f02.g1 MSMg01no102_f02.g1 CHROMAT_FILE:
MSMg01no102_f02.g1 PHD_FILE: MSMg01no102_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:52 2005
(539 letters)
>mm_chr1_96499113_96500056
Length = 944
Score = 828 bits (428), Expect = 0.0
Identities = 453/464 (97%), Gaps = 7/464 (1%)
Strand = Plus / Minus
Query: 1 agtcttatgttggagctctcaacttgagaaatctttctgttaa----aaaac--aacaaa 54
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 463 agtcttatgttggagctctcaacttgagaaatctttctgttaaaaacaaaacaaaacaaa 404
Query: 55 acaaaacaaaaaaaaagtaatatcagaataaaagttttaaaatgtctaggtaattttgcc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acaaaacaaaaaaaaagtaatatcagaataaaagttttaaaatgtctaggtaattttgcc 344
Query: 115 ctaatatttcactccaatttaagtgtcttaagaaaacagaggaaatttagagaagaaata 174
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 343 ctaatatttcactccaatttaagtttcttaagaaaacagaggaaatttagagaagaaata 284
Query: 175 taaatcccagctgaatattaaaaacaaattagtaggtagcaaagataacgacatatcata 234
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 283 taaatcccagctgaatattaacaacaaattagtaggtaacaaagataacgacatatcata 224
Query: 235 tgatggaatgctgtatcatcaatttgttgtgggaaatattttaaaagaacggtaaatttc 294
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 223 tgatggaatgctgta-catcaatttgttgtgggaaatattttaaaagaacggcaaatttc 165
Query: 295 cacagtcctgccaggcactggcaactctctgtcatgtggagctgacccgctattcactgg 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 cacagtcctgccaggcactggcaactctctgtcatgtggagctgacccgctattcactgg 105
Query: 355 agggcaatggtcaacctgttattatctcttggagactctagggcccagagctcctgaaac 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 agggcaatggtcaacctgttattatctcttggagactctagggcccagagctcctgaaac 45
Query: 415 atctctacccaacctgccagttaaactcgggtatttctttcttt 458
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 atctctacccaacctgccagttaaactcgggtatttctttcttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 944
Length adjustment: 10
Effective length of query: 529
Effective length of database: 934
Effective search space: 494086
Effective search space used: 494086
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
