Query= MSMg01no102_j06.b1 MSMg01no102_j06.b1 CHROMAT_FILE:
MSMg01no102_j06.b1 PHD_FILE: MSMg01no102_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:12 2005
(190 letters)
>mm_chr1_78061281_78061870
Length = 590
Score = 352 bits (182), Expect = e-102
Identities = 188/190 (98%)
Strand = Plus / Plus
Query: 1 ttttaaagtagcctcagagtttagaaagcacagctatgatgactctgaaatgtattaatt 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaaagtagtctcagagtttagaaagcacagctatgatgactctgaaatgtattaatt 260
Query: 61 tcagctatgaaatggattcttgcagctactaaataagctgaacttggttacagactttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagctatgaaatggattcttgcagctactaaataagctgaacttggttacagactttca 320
Query: 121 aagactgcttaaataatgattatatatatttacaccgttcttactcaaatataactcacg 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagactgcttaaataatgagtatatatatttacaccgttcttactcaaatataactcacg 380
Query: 181 gggatgaata 190
||||||||||
Sbjct: 381 gggatgaata 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space: 105924
Effective search space used: 105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no102_j06.g1 MSMg01no102_j06.g1 CHROMAT_FILE:
MSMg01no102_j06.g1 PHD_FILE: MSMg01no102_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:13 2005
(238 letters)
>mm_chr1_78201023_78201660
Length = 638
Score = 402 bits (208), Expect = e-117
Identities = 225/238 (94%), Gaps = 12/238 (5%)
Strand = Plus / Minus
Query: 1 gggggtgacctcaagtgtcctagaggtcaactctagggaagttggcaagaaagatcacac 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 352 gggggtgacctcaagtgtcctagaggtcaactctagggaagttgggaagaaagatcacac 293
Query: 61 cagagcatcacttgcagggcatccgtccataagcacccaaagtctctgccttctcaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cagagcatcacttgcagggcatccgtccataagcacccaaagtctctgccttctcaagaa 233
Query: 121 ctgagtaccatagggctgcagagcctgaaatgacccccaccctacccctacccctacccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ctgagtaccatagggctgcagagcctgaaatgacccccaccctacccctacccctacccc 173
Query: 181 tactcctacccctacccctgcagcatcttcagccagcttttcactggctacctggaga 238
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tac------------ccctgcagcatcttcagccagcttttcactggctacctggaga 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
