Query= MSMg01no102_l04.b1 MSMg01no102_l04.b1 CHROMAT_FILE:
MSMg01no102_l04.b1 PHD_FILE: MSMg01no102_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:22 2005
(297 letters)
>mm_chr1_39855855_39856551
Length = 697
Score = 551 bits (285), Expect = e-161
Identities = 294/297 (98%)
Strand = Plus / Minus
Query: 1 aacgaggggcctgcctatcagacccaatgtgtagatttacttgattccagactcaatcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 497 aacgaggggcctgcctatcagacccaatgtgtagatttacttgattccagactcactcaa 438
Query: 61 ctgattgtaaaataacatcgatggaaacaccaggaaaatgtgtacatgaactgaagatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctgattgtaaaataacatcgatggaaacaccaggaaaatgtgtacatgaactgaagatct 378
Query: 121 gatcacatgaaggggctggtttctaagcactgtaatgttactatagctcgtctttacaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gatcacatgaaggggctggtttctaagcactgtaatgttactatagctcgtctttacaat 318
Query: 181 aaaaacatgtttcttctaaattattcatagatgagatgtttttattgctacaaagcaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaaaacatgtttcttctaaattattcatagatgagatgtttttattgctacaaagcaatt 258
Query: 241 cagaggagtttctcagcactgtaaggaatcgtgaaggtctttggtgtaaaaccaatg 297
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 257 cagaggagtttctcagcactgtaaggaaccgtgaaggtctttagtgtaaaaccaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no102_l04.g1 MSMg01no102_l04.g1 CHROMAT_FILE:
MSMg01no102_l04.g1 PHD_FILE: MSMg01no102_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:22 2005
(295 letters)
>mm_chr1_39751621_39752313
Length = 693
Score = 513 bits (265), Expect = e-150
Identities = 287/295 (97%), Gaps = 2/295 (0%)
Strand = Plus / Plus
Query: 1 ctggcagtatagagactgccagggcacttggcggggattcaagaggagggaccagccctc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ctggcagtatagagactgccagggcacttggcggggattcaagaggagagaccagccctc 260
Query: 61 gtgggtaacatctgacccaccacagccccttctgcagttctggacactctgtccctcaac 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gtgggtaacatctgacccaccacagccccttctgcagttctggactctctgtccctcaac 320
Query: 121 acagtcccagtgtctttctgagtacagacaatatttttccagcacaaggccacgagattt 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 acagtcccagtgtctttctgagtacagacaatacttttccagcacaaggccacgagattt 380
Query: 181 tgtctttataacttttgggtactagttacccccccccccaaatgttttaaaaagtggttc 240
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tgtctttataacttttgggtactagttaccccccccc--aaatgttttaaaaagtggttc 438
Query: 241 ttgtcagtgatatcgtatatgctagcaacagttacttctaatccctatattgata 295
|||||||||| ||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 439 ttgtcagtgagatcgtatctgctagcaacagttccttctaatccctatattgata 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 693
Length adjustment: 9
Effective length of query: 286
Effective length of database: 684
Effective search space: 195624
Effective search space used: 195624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
