Query= MSMg01no102_o19.b1 MSMg01no102_o19.b1 CHROMAT_FILE:
MSMg01no102_o19.b1 PHD_FILE: MSMg01no102_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:40 2005
(194 letters)
>mm_chr1_90111319_90111912
Length = 594
Score = 352 bits (182), Expect = e-102
Identities = 191/194 (98%)
Strand = Plus / Minus
Query: 1 tggctttcttctccggaatctctgagaccatggatcccaaagagaaaacaacgatgccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tggctttcttctccggaatctctgagaccatggatcccaaagagaaaacaacgatgccat 335
Query: 61 gctccccagaggcgttgacataggcttcaaattcctagagcagaaaaagatatttctagt 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 334 gctccccagaggcgttgacataggcttcaaattcctagagtagaaaaagatatttctagt 275
Query: 121 tcatctcttgtccctcacattccttgtgacctaagcacattacattataagttacttccc 180
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 274 tcatctcttgtccctcacattccttgtgacctaagcacattagattacaagttacttccc 215
Query: 181 tcttatggaagtca 194
||||||||||||||
Sbjct: 214 tcttatggaagtca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space: 108996
Effective search space used: 108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no102_o19.g1 MSMg01no102_o19.g1 CHROMAT_FILE:
MSMg01no102_o19.g1 PHD_FILE: MSMg01no102_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:40 2005
(496 letters)
>mm_chr1_90032630_90033527
Length = 898
Score = 752 bits (389), Expect = 0.0
Identities = 473/501 (94%), Gaps = 8/501 (1%)
Strand = Plus / Plus
Query: 1 tacatctggattggcaggcagcagggagggggagacacattgggccttggctggaggccc 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tacatctggattggcaggcaacagggagggggagacacattgggccttggctggagcccc 260
Query: 61 tgaaacctcaaaggccaccaccagtgacacctttcctccaacaaggccacatctactcca 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaacctcaaaggccaccatcagtgacacctttcctccaacaaggccacatctactcca 320
Query: 121 aggccatgcctcctaactttttaaatagtgctacttcctattagcccacaggggccattt 180
||||||| ||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 321 aggccattcctcctaactttttaaatagtgcaattttttatgagcccacaggggccattt 380
Query: 181 tcatttaaaccaccaaagggagggcttgaaagctgcagccctctgctcacatcagccctg 240
|||||||||| |||||| |||||||| ||||||||||| |||||| ||||||||||||||
Sbjct: 381 tcatttaaactaccaaaaggagggctagaaagctgcagacctctggtcacatcagccctg 440
Query: 241 agctctgcct-tccctggaacatgcttatcatatgtgctccaggtcgctctcactctcca 299
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctctgc-tgtccctggaacatgcttatcatatgtgctccaggtcgctctcactctcca 499
Query: 300 gagttctgtcatttcagagagagcaatgccatgcatcaataagaaaggcttgggccatag 359
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagttctgtcatttcagagagatcaatgccatgcatcaataagaaaggcttgggccatag 559
Query: 360 gtgggaaagtttatttgatatcaaacaaggagattcaaaataaattcttggagcccagtg 419
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct: 560 gtgggaaagtttatttgatatcaaacaaggagattcaaaatacattctaggagcccattg 619
Query: 420 gcattt-ggagcccattttag-aacatgaacacagttttctgct-agcaataccaaaatg 476
|||||| |||||||||||||| || |||||||||||||||| || |||||||||||||||
Sbjct: 620 gcattttggagcccattttaggaa-atgaacacagttttct-cttagcaataccaaaatg 677
Query: 477 gtcacttgcttttct-gagca 496
|||| ||||||| || |||||
Sbjct: 678 gtcatttgctttcctagagca 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 898
Length adjustment: 10
Effective length of query: 486
Effective length of database: 888
Effective search space: 431568
Effective search space used: 431568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
